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BioLiP
>protein
LPDVTLSLCGGGEISKEKFMEHIITYHEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVKD

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kiq:E 83 80 0.9750 0.9398 0.9750 6.49e-55 7kiq:A, 7kiq:B, 7kiq:D, 7kiq:F, 7kiq:G, 7kiq:H, 7kiq:I, 7kiq:J
2 7kil:A 88 84 0.5625 0.5114 0.5357 4.58e-33
3 7c86:A 296 55 0.2625 0.0709 0.3818 0.33 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
4 5b0w:A 261 18 0.1125 0.0345 0.5000 1.1 3a7k:A, 3a7k:D, 3a7k:B, 3abw:A, 3abw:D, 3abw:B, 5b0w:E, 5b0w:B, 5b0w:F, 5b0w:D, 5b0w:G, 5etz:A, 5etz:B, 5etz:D, 3qbg:A, 3qbg:B, 3qbg:D, 3qbi:A, 3qbi:B, 3qbi:D, 3qbk:A, 3qbk:D, 3qbk:B, 3qbl:A, 3qbl:B, 3qbl:D, 4qry:A, 4qry:E, 4qry:B, 4qry:F, 4qry:C, 4qry:G, 3vvk:A, 3vvk:D, 3vvk:B, 3vvk:E, 3vvk:C, 3vvk:F
5 5ahz:A 243 34 0.1625 0.0535 0.3824 2.0 5ahy:A, 1e12:A, 5g36:A, 2jaf:A, 2jag:A
6 6wcd:A 314 55 0.1875 0.0478 0.2727 2.0
7 6so9:A 112 29 0.1250 0.0893 0.3448 2.2
8 1tyo:A 427 22 0.1250 0.0234 0.4545 3.0 1xkd:A, 1xkd:B
9 6p73:A 439 35 0.1500 0.0273 0.3429 3.2 6p73:B, 3ubr:A, 3ubr:B
10 8jh0:B 265 29 0.1375 0.0415 0.3793 4.5 8jh0:A
11 6gys:A 421 21 0.1125 0.0214 0.4286 6.7
12 5jp0:A 745 57 0.1875 0.0201 0.2632 7.1 5jp0:B
13 8egs:Y 586 25 0.1500 0.0205 0.4800 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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