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BioLiP
>protein
LPDLSGRLLINSVFHMGAERLQQMLFSDSPFLQGFLQQRKFTDVTLSPWSSDSKCHQRRVLTYTIPIKSASVVETQTLFR
RGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCILGLARNKARLRVSSEIRYRKQPWSLVKSLIEKNSWSGIEDYFHHLDR
ELAKAEK

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gqf:A 168 172 0.9641 0.9583 0.9360 5.07e-115 6gqf:B, 6gqf:C, 6gqf:D
2 7azn:A 177 167 0.4910 0.4633 0.4910 7.58e-56 8axw:A
3 2c1c:A 312 53 0.0838 0.0449 0.2642 0.42 2c1c:B
4 3s6t:A 575 39 0.0539 0.0157 0.2308 2.5 3nsn:A, 3ozo:A, 3ozp:A, 3vtr:A, 3wmb:A, 3wmc:A, 5y0v:A, 5y1b:A
5 6cay:A 165 173 0.1976 0.2000 0.1908 3.1 6cay:B
6 2qlw:B 108 42 0.0958 0.1481 0.3810 3.1 2qlx:A, 2qlx:B
7 6k35:A 640 29 0.0599 0.0156 0.3448 5.2 6k35:B
8 3b47:A 121 54 0.0838 0.1157 0.2593 7.3
9 6s8w:B 491 39 0.0838 0.0285 0.3590 9.8 6s8w:A, 6s8w:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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