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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LNQSPLLINLDIDPVTGDSVINAAEAGGTVTLTGVVNGDVFSSGVVTLVINGVTYSTNVNPNGTWSVSVAGSDLSADSDR
IVDASVVVTNGAGQQGTADSTESFIVKTSSRATIRVNSITSDDVVNAEESNSTITVSGRVGLDASAGDTVSMTINGTLYT
TVVLANKTWSVGVSGSDLAQDNSFQVSVTGQDSAGNPYAGTTTSTHTVDTSADAGTVTVNAITSDDVINASEAAGTVAVS
GTATGGDIAEGDTVTLEINGETYTTTVDANGEWSVDVAGSDLAADTAFDAVVTSSDAAGNTVDTTGSSTHTVD

The query sequence (length=313) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5irb:B 314 312 0.9968 0.9936 1.0000 0.0 5irb:A
2 4p99:A 415 307 0.6581 0.4964 0.6710 1.12e-110 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
3 4p99:A 415 307 0.6581 0.4964 0.6710 1.12e-110 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
4 4p99:A 415 202 0.5016 0.3783 0.7772 1.89e-88 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
5 5k8g:A 511 103 0.2013 0.1233 0.6117 2.47e-26 6x5v:A, 6x5w:A, 6x6m:A, 6x6q:A
6 5k8g:A 511 104 0.1757 0.1076 0.5288 4.29e-19 6x5v:A, 6x5w:A, 6x6m:A, 6x6q:A
7 5k8g:A 511 107 0.1150 0.0705 0.3364 1.27e-05 6x5v:A, 6x5w:A, 6x6m:A, 6x6q:A
8 2yi9:A 771 47 0.0607 0.0246 0.4043 1.1 2yi9:B, 2yi9:C, 2yi9:D, 2yi9:E, 3zed:A, 3zed:B, 3zed:C
9 1tg7:A 971 29 0.0511 0.0165 0.5517 1.7 1xc6:A
10 4iv9:A 552 111 0.0958 0.0543 0.2703 2.3 4iv9:B
11 3meq:A 341 43 0.0479 0.0440 0.3488 2.9 3meq:B, 3meq:C, 3meq:D
12 2yn3:C 284 82 0.0799 0.0880 0.3049 3.0 2yn3:A, 2yn3:B, 2yn3:D, 2yn5:A, 2yn5:B
13 5b8h:A 256 31 0.0383 0.0469 0.3871 3.8 5b8h:B
14 6z42:A 336 43 0.0447 0.0417 0.3256 3.8 6z42:B, 6z42:C, 6z42:D
15 6i9a:A 453 107 0.0831 0.0574 0.2430 7.0 6i9a:B, 4rbm:A, 4tkx:L
16 4r0m:A 637 35 0.0447 0.0220 0.4000 9.0 4r0m:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218