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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI
VAYYILATSSNGYDP

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wg5:AG 99 95 0.9474 0.9091 0.9474 2.67e-63 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
2 8wgh:G 98 95 0.9158 0.8878 0.9158 1.13e-59
3 3lw5:G 95 92 0.9053 0.9053 0.9348 1.41e-59 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
4 8bcv:G 94 95 0.8526 0.8617 0.8526 1.99e-55
5 5zji:G 97 95 0.8421 0.8247 0.8421 4.85e-55
6 4y28:G 91 94 0.8526 0.8901 0.8617 6.21e-54
7 6l35:G 98 94 0.6737 0.6531 0.6809 2.36e-45 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
8 4rku:G 84 89 0.7368 0.8333 0.7865 5.71e-41
9 7a4p:G 99 91 0.5474 0.5253 0.5714 6.09e-35 6zzx:G, 6zzy:G
10 7yca:G 95 87 0.5053 0.5053 0.5517 4.73e-32
11 7zq9:G 95 92 0.3895 0.3895 0.4022 5.35e-18 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 7zqc:G 80 90 0.3789 0.4500 0.4000 1.24e-15 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
13 8cmo:G 93 93 0.3263 0.3333 0.3333 3.53e-15
14 6ijo:G 70 90 0.3368 0.4571 0.3556 1.04e-13 7r3k:G
15 6sl5:G 101 96 0.3684 0.3465 0.3646 7.70e-08
16 7a4p:K 86 81 0.3158 0.3488 0.3704 5.90e-07 6zzx:K, 6zzy:K
17 6igz:K 80 85 0.3158 0.3750 0.3529 1.48e-06
18 8j6z:K 84 85 0.2947 0.3333 0.3294 1.40e-05 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
19 8htu:K 81 83 0.2632 0.3086 0.3012 3.45e-05 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
20 8bcv:K 88 85 0.2947 0.3182 0.3294 4.48e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
21 8cmo:K 89 29 0.1684 0.1798 0.5517 1.98e-04
22 8wgh:K 83 83 0.2737 0.3133 0.3133 2.89e-04
23 7wfd:AK 65 29 0.1263 0.1846 0.4138 4.00e-04 7wfe:BK, 7wg5:AK, 7wg5:BK
24 7dz7:K 86 20 0.1579 0.1744 0.7500 4.20e-04 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
25 8j7a:K 56 25 0.1158 0.1964 0.4400 0.006
26 7yca:K 87 31 0.1789 0.1954 0.5484 0.11
27 6sl5:K 84 73 0.2526 0.2857 0.3288 0.16
28 8wm6:K 69 31 0.1474 0.2029 0.4516 1.6 8wmj:K, 8wmv:K, 8wmw:K
29 4xk8:k 46 17 0.0947 0.1957 0.5294 2.6 4xk8:K
30 6et3:B 275 75 0.2421 0.0836 0.3067 2.9
31 2cks:B 306 52 0.1579 0.0490 0.2885 3.4 2ckr:B, 2ckr:A, 2cks:A
32 8b4l:C 311 18 0.0947 0.0289 0.5000 3.8 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
33 4a42:A 127 15 0.1053 0.0787 0.6667 4.3 4a42:B
34 5odn:D 106 28 0.1053 0.0943 0.3571 6.7 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
35 6jl2:A 401 50 0.1895 0.0449 0.3600 6.8 6jkz:A, 6jl2:B, 6jl2:C
36 2xj9:A 265 59 0.1684 0.0604 0.2712 9.0 2xj9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218