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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LNLKILEDVKKLYLQSFDYIKNGISSITFLYKFISVNPTLLLINEKTQAKRRIFQGEYLYGKKKIQFNIIAKNLEIEREL
IQFFKKPYQCYIMHNVQVFQLYYLIDESSHVLEDDSMDFISTLTRLSDSFNSNEFVFETNYSIQISQMPKPLNTTHFKLL
QPKVVNSFEGVILQVQEGKNILQIEELIDQVYLNSRRDRFYILKVANGKNYMDFIEVYLVYDNEDQEAKQQLQFYLKPFQ
RILIFQSLKHFTKNLKLFMISFFYSSGVQPNNSNVKNFLVSHKGVEFFSRFDIQKNELLCKDLIKSYNKLPLSNISKLLE
DEGVMIRSNMKFQVRVKKVKYFKIRLNCLNCKQEWTVGLKNCINCKGQQSYISYNIQVLVQDQHFLEQQAYIYLYDDLAA
QFFNITESEKKELHLHLTKNETFIQLYYSFNKDYPLSIIKFKDKIFNKDITNCIVAYPFADIDNKIKQQIFVNGTYISTN
YSQGQKICLKPIPCLKVMYVFPQEDIKLSALKIIEEINQLKIQIDQLN

The query sequence (length=528) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uy5:I 528 528 1.0000 1.0000 1.0000 0.0
2 7uy7:A 552 554 0.9943 0.9511 0.9477 0.0
3 7x5c:A 172 166 0.2443 0.7500 0.7771 7.45e-76
4 6z2w:E 2325 65 0.0398 0.0090 0.3231 0.66 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
5 8spo:M 394 200 0.0852 0.1142 0.2250 1.0 8spo:E
6 8isz:B 450 126 0.0549 0.0644 0.2302 2.0 8ifk:A, 8ifl:A, 8ifl:F, 8ifl:J, 8ifl:N, 8ifm:A, 8ifm:F, 8ifm:J, 8ifm:N, 8it0:B, 8it0:F, 8it1:J, 8it1:N, 8it1:B, 8it1:F, 8j8h:B, 8j9g:B, 8j9p:B, 8j9p:D, 8jay:B, 8jay:D, 8jay:J, 8jay:N, 8k9g:B, 8k9g:F, 8u72:B, 8u72:D, 8u72:H, 8u72:F, 8u7b:B
7 6li2:A 347 106 0.0455 0.0692 0.2264 2.6
8 8jze:a 670 108 0.0455 0.0358 0.2222 3.4 8jzf:a
9 8ffi:A 419 126 0.0587 0.0740 0.2460 4.0 8ffi:E, 8ffi:I, 8ffi:M, 8i87:G, 8i87:O, 8i87:A, 8i87:C, 8j7s:B, 8j7s:F, 8j7s:J, 8j7s:N, 8jr8:B, 8jr8:D, 8oz6:A, 8oz6:C, 8oz6:E, 8oz6:G, 8ozd:A, 8ozd:C, 8oze:E, 8oze:G, 8ozf:A, 8ozf:C, 8ozf:F, 8ozf:H, 8ozg:A, 8ozg:C, 8ozg:F, 8ozg:H, 8ozi:A, 8ozi:C, 8ozi:E, 8ozi:G, 8sp0:A, 8sp0:E, 8sp3:A, 8sp3:E, 8spo:A
10 7v94:A 1076 79 0.0360 0.0177 0.2405 4.3 7v93:A
11 8spo:I 371 126 0.0587 0.0836 0.2460 4.9
12 6ywe:4 137 48 0.0284 0.1095 0.3125 6.5 6yws:4, 6ywv:4, 6ywx:4, 6ywy:4
13 6rl5:G 422 58 0.0379 0.0474 0.3448 8.0 6rl5:A, 6rl5:B, 6rl5:C, 6rl5:D, 6rl5:E, 6rl5:F, 6rl5:H
14 2du4:A 466 42 0.0246 0.0279 0.3095 8.8 2du3:B, 2du5:B, 2du6:B
15 2du3:A 534 42 0.0246 0.0243 0.3095 8.9 2du5:A, 2du6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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