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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LNLDPVQLTFYAGPNGSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAEGGQCPSLLFDLRDETRNVG
SQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDF
SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA
VGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADR
KLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLR
SRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV

The query sequence (length=453) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t2v:A 946 453 1.0000 0.4789 1.0000 0.0 4cak:A, 3fcs:A, 3fcs:C, 3fcu:A, 3fcu:C, 3fcu:E, 8gcd:A, 8gce:A, 5hdb:A, 5hdb:C, 7l8p:A, 7l8p:C, 7la4:A, 3nid:A, 3nid:C, 3nif:A, 3nif:C, 3nig:A, 3nig:C, 8t2u:A, 3t3m:A, 3t3m:C, 3t3p:A, 3t3p:C, 7tct:A, 7tct:C, 7td8:A, 7td8:C, 7tho:A, 7tho:C, 7tmz:A, 7tmz:C, 7tpd:A, 7tpd:C, 1tye:A, 1tye:C, 1tye:E, 7u60:A, 7u60:C, 7u9f:A, 7u9f:C, 7u9v:A, 7u9v:C, 7ubr:A, 7ubr:C, 7ucy:A, 7ucy:C, 7udg:A, 7udg:C, 7udh:A, 7udh:C, 7ue0:A, 7ue0:C, 7ufh:A, 7ufh:C, 7uh8:A, 7uh8:C, 7uje:A, 7uje:C, 7ujk:A, 7ujk:C, 7uk9:A, 7uk9:C, 7uko:A, 7uko:C, 7ukp:A, 7ukp:C, 7ukt:A, 7ukt:C, 6v4p:A, 2vc2:A, 2vdk:A, 2vdl:A, 2vdm:A, 2vdn:A, 2vdo:A, 2vdp:A, 2vdq:A, 2vdr:A, 4z7n:A, 4z7n:C, 4z7o:A, 4z7o:C, 4z7q:A, 4z7q:C, 3zdx:A, 3zdx:C, 3zdy:A, 3zdy:C, 3zdz:A, 3zdz:C, 3ze0:A, 3ze0:C, 3ze1:A, 3ze1:C, 3ze2:A, 3ze2:C
2 7nxd:A 905 468 0.4525 0.2265 0.4380 3.04e-105 9ckv:A, 7nwl:A, 3vi3:A, 3vi3:C, 3vi4:C, 3vi4:A, 4wjk:A, 4wk0:A, 4wk2:A, 4wk4:A
3 4g1e:A 964 463 0.4437 0.2085 0.4341 3.21e-102 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
4 4irz:A 592 470 0.3113 0.2382 0.3000 3.06e-45 3v4p:A, 3v4p:C, 3v4v:A, 3v4v:C
5 7ceb:A 553 459 0.3068 0.2514 0.3028 2.37e-36 7cec:A
6 3k6s:C 885 469 0.2980 0.1525 0.2878 1.50e-21 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
7 7usl:A 856 429 0.2539 0.1343 0.2681 4.35e-21 7usm:A
8 7p2d:A 751 304 0.2053 0.1238 0.3059 1.95e-20 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
9 4neh:A 1084 309 0.2185 0.0913 0.3204 4.26e-18 5es4:A, 3k6s:A, 3k71:G
10 4nen:A 1063 309 0.2185 0.0931 0.3204 6.43e-18
11 5e6u:A 583 239 0.1722 0.1338 0.3264 1.84e-16 5e6r:A, 5e6s:A, 5e6s:C, 5e6s:E
12 8p5d:LJ0 167 48 0.0331 0.0898 0.3125 0.085 8p60:LJ0, 8p60:KJ0, 7qca:LJ0
13 5fby:A 490 58 0.0397 0.0367 0.3103 2.3 5fc2:B, 5fc3:B
14 4qtq:A 209 18 0.0221 0.0478 0.5556 3.8
15 5a3o:A 114 56 0.0397 0.1579 0.3214 3.9 5a3o:B, 5a3o:C, 5a3o:D, 8aij:AAA, 8aij:BBB, 8aij:CCC, 8aij:DDD, 8aiy:AAA, 8aiy:BBB, 8aiy:CCC, 8aiy:DDD, 8an9:A, 8an9:B, 8an9:C, 8an9:D, 8ano:A, 8ano:D, 8ano:B, 8ano:C, 8anr:A, 8anr:B, 8aoo:A, 8aoo:B, 8aoo:C, 8aoo:D, 2boj:A, 2boj:B, 2boj:C, 2boj:D, 2bp6:A, 2bp6:B, 2bp6:C, 2bp6:D, 4ce8:A, 4ce8:B, 4ce8:C, 4ce8:D, 5d2a:A, 5d2a:B, 3dcq:A, 3dcq:B, 3dcq:C, 3dcq:D, 1gzt:A, 1gzt:B, 1gzt:C, 1gzt:D, 5hch:A, 5i8m:A, 5i8m:C, 5i8m:D, 5i8m:B, 5i8x:A, 5i8x:D, 5i8x:B, 5i8x:C, 2jdh:B, 2jdh:C, 2jdh:D, 2jdh:A, 2jdk:B, 2jdk:C, 2jdk:D, 2jdk:A, 2jdm:A, 2jdm:B, 2jdm:C, 2jdm:D, 2jdn:A, 2jdn:B, 2jdn:C, 2jdn:D, 2jdp:A, 2jdp:B, 2jdp:C, 2jdp:D, 2jdu:C, 2jdu:D, 2jdy:A, 2jdy:B, 2jdy:C, 2jdy:D, 5nes:A, 5nes:C, 5nes:B, 5nes:D, 5ney:B, 5ney:A, 5ney:C, 5ney:D, 7nef:C, 7nef:A, 7nef:B, 7nef:D, 7nef:E, 7nef:F, 7nef:G, 7nef:H, 7new:C, 7new:A, 7new:B, 7new:D, 5nf0:B, 5nf0:D, 5nf0:C, 5nf0:A, 5ngq:A, 5ngq:D, 5ngq:B, 5ngq:C, 1our:A, 1oux:A, 1oux:B, 1oux:C, 1oux:D, 1ovp:A, 1ovs:A, 1ovs:B, 1ovs:C, 1ovs:D, 1oxc:A, 1oxc:B, 1oxc:C, 1oxc:D, 7prg:A, 7prg:B, 7prg:C, 7prg:D, 7psy:A, 7psy:B, 7psy:C, 7psy:D, 6q6w:A, 6q6x:C, 6q6x:A, 6q6x:B, 6q6x:D, 6q77:A, 6q79:C, 6q79:A, 6q79:D, 6q79:B, 6q85:A, 6q85:B, 6q85:C, 6q85:D, 6q86:A, 6q86:B, 6q87:A, 6q8d:A, 6q8g:A, 6q8g:B, 6q8g:C, 6q8g:D, 6q8h:A, 6r35:D, 6r35:C, 6r35:A, 6r35:B, 6s5p:A, 6s5p:B, 6s5p:C, 6s5p:D, 6s5r:A, 6s5r:B, 6s5r:C, 6s5r:D, 6s5s:A, 6s7g:C, 6s7g:A, 6s7g:B, 6s7g:D, 1uzv:A, 1uzv:B, 1uzv:C, 1uzv:D, 2vuc:A, 2vuc:B, 2vuc:C, 2vuc:D, 2vud:A, 2vud:B, 2vud:C, 2vud:D, 1w8f:A, 1w8f:B, 1w8f:C, 1w8f:D, 1w8h:A, 1w8h:B, 1w8h:C, 1w8h:D, 6y0u:A, 6y0u:B, 6y0u:C, 6y0u:D, 6y0v:A, 6y0v:B, 6y0v:C, 6y0v:D, 6y0w:B, 6y0w:A, 3zdv:A, 3zdv:B, 3zdv:C, 3zdv:D
16 7krm:C 244 37 0.0353 0.0656 0.4324 4.5 7krm:A, 7krm:B, 7krm:D
17 7uoo:x 504 68 0.0442 0.0397 0.2941 5.2 7ohq:x, 7oht:x, 7uqb:x, 7uqz:x, 7v08:x, 4wjv:C, 4wjv:D, 4wjv:A, 4wjv:B, 6ylg:x, 6ylh:x
18 7c5x:A 506 116 0.0684 0.0613 0.2672 6.8 7c5x:B
19 7ajt:UR 482 53 0.0375 0.0353 0.3208 7.4 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
20 6yfv:B 79 33 0.0287 0.1646 0.3939 8.7 6yfv:D, 6ygu:B, 6ygu:D
21 6vbu:2 659 20 0.0243 0.0167 0.5500 8.8 6vbv:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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