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BioLiP
>protein
LMVGLDGAKTTVLYKLKLGVITTIPTGGLDRIRSLWRHYYVIFVVDSNREVMQRMLVFANKQDAAEITEKLGLATCATSG
EGLYEG

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4q66:I 86 86 1.0000 1.0000 1.0000 9.68e-60
2 4q66:C 134 128 0.9535 0.6119 0.6406 3.16e-36
3 2k5u:A 181 149 0.9884 0.4696 0.5705 3.37e-35 2ksq:A, 1mr3:F, 4q66:F, 4q66:L, 3tjz:A, 3tjz:D
4 8d4c:C 180 149 0.8372 0.4000 0.4832 9.00e-28 8d4c:H, 8d4c:D, 8d4c:F, 8d4d:C, 8d4d:H, 8d4d:D, 8d4d:F, 8d4e:C, 8d4e:H, 8d4e:Z, 8d4f:C, 8d4f:H, 8d4f:Z, 8d4f:D, 8d4f:F, 8d4f:Q, 8d4g:C, 8d4g:H, 8d4g:Z, 8d4g:D, 8d4g:F, 8d4g:Q, 8d9r:C, 8d9r:H, 8d9r:Z, 8d9r:J, 8d9r:X, 8d9r:3, 8d9r:K, 8d9r:a, 8d9r:4, 8d9r:O, 8d9r:b, 8d9r:5, 8d9r:P, 8d9r:c, 8d9r:6, 8d9r:Q, 8d9r:d, 8d9r:7, 8d9s:C, 8d9s:H, 8d9s:Z, 8d9s:J, 8d9s:X, 8d9s:3, 8d9s:K, 8d9s:a, 8d9s:4, 8d9s:O, 8d9s:b, 8d9s:5, 8d9s:P, 8d9s:c, 8d9s:6, 8d9s:Q, 8d9s:d, 8d9s:7, 8d9t:C, 8d9t:H, 8d9t:J, 8d9t:X, 8d9t:K, 8d9t:Z, 8d9t:O, 8d9t:a, 8d9t:P, 8d9t:b, 8d9t:Q, 8d9t:c, 8d9u:C, 8d9u:H, 8d9u:J, 8d9u:X, 8d9u:K, 8d9u:Z, 8d9u:O, 8d9u:a, 8d9u:P, 8d9u:b, 8d9u:Q, 8d9u:c, 8d9v:C, 8d9v:H, 8d9v:D, 8d9v:F, 8d9w:F, 8d9w:I, 1hur:A, 1hur:B, 7ux3:C, 7ux3:H
5 3lrp:A 181 149 0.8140 0.3867 0.4698 2.07e-26
6 5uf8:D 160 145 0.8023 0.4313 0.4759 1.06e-25
7 3o47:A 289 144 0.8140 0.2422 0.4861 2.09e-24 4c0a:C, 4c0a:D, 4c0a:G, 4c0a:H, 6cm9:C, 6cm9:H, 6cri:C, 6cri:H, 6cri:K, 6cri:U, 6cri:L, 6cri:V, 6d83:C, 6d83:H, 6d84:C, 6d84:H, 6d84:I, 6d84:N, 6dff:C, 6dff:H, 7dn8:D, 7dn8:B, 7dn8:F, 7dn8:H, 7dn9:B, 7dn9:D, 7dn9:F, 7dn9:H, 3dwd:A, 3dwd:B, 4hmy:C, 6ii6:C, 6ii6:D, 1j2j:A, 2j59:A, 2j59:B, 2j59:C, 2j59:D, 2j59:E, 2j59:F, 7mge:E, 1o3y:A, 1o3y:B, 3o47:B, 8p50:B, 7r4h:C, 7r4h:H, 1r8q:A, 1r8q:B, 1r8s:A, 1re0:A, 1rrf:A, 1rrg:A, 1rrg:B, 1s9d:A, 8sdw:A, 1u81:A, 7wqy:A, 7wqy:B
8 3aq4:A 170 142 0.7907 0.4000 0.4789 3.80e-24 3aq4:B
9 1z6x:A 175 149 0.7674 0.3771 0.4430 5.73e-24 1z6x:B
10 6pta:A 165 144 0.7674 0.4000 0.4583 2.67e-22 6pta:B, 6pta:C, 6pta:D, 5uf8:A, 5uf8:B, 5uf8:C
11 4y0v:A 165 143 0.7209 0.3758 0.4336 1.08e-21 4y0v:B, 4ylg:A, 4ylg:B
12 2b6h:A 171 144 0.7442 0.3743 0.4444 1.66e-21
13 6bbp:A 520 149 0.7442 0.1231 0.4295 5.40e-21 2a5d:A, 2a5f:A, 2a5g:A, 6bbq:A, 1e0s:A, 1fgy:A, 1fhw:A, 1fhw:B, 1fhx:A, 1fhx:B, 4fme:C, 4fme:F, 2j5x:A, 2j5x:B, 4kax:A, 4kax:B, 3n5c:A, 3n5c:B, 3pcr:B, 2r09:A, 2r09:B, 2r0d:A, 2r0d:B, 3vhx:A, 3vhx:C, 3vhx:E, 3vhx:G, 2w83:A, 2w83:B, 2w83:E, 7xrd:A, 7xrd:B, 7xrd:C, 7xrd:D
14 3lvq:E 420 149 0.7326 0.1500 0.4228 2.01e-20 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
15 6a8d:A 181 149 0.6395 0.3039 0.3691 7.51e-16
16 1moz:A 178 145 0.6163 0.2978 0.3655 2.05e-12 8ezj:C, 8ezj:D, 1moz:B
17 1upt:G 170 149 0.6163 0.3118 0.3557 1.00e-11 4dcn:A, 4dcn:B, 5ee5:B, 5j5c:A, 1r4a:A, 1r4a:B, 1r4a:C, 1r4a:D, 1upt:A, 1upt:C, 1upt:E
18 7rll:B 177 109 0.4884 0.2373 0.3853 5.27e-10 7rll:A
19 1yzg:A 168 149 0.5698 0.2917 0.3289 1.55e-09
20 1zj6:A 173 145 0.5814 0.2890 0.3448 6.39e-08 2h16:A, 2h16:B, 2h16:C, 2h16:D, 2h17:A, 1z6y:A, 1z6y:B
21 2x77:A 181 149 0.5233 0.2486 0.3020 7.30e-07 2x77:B
22 5de3:A 166 149 0.5930 0.3072 0.3423 5.49e-06 5di3:A
23 3doe:A 189 109 0.4419 0.2011 0.3486 3.01e-05 3dof:A, 4gok:B, 4gok:A, 1ksg:A, 1ksh:A, 1ksj:A
24 4zi2:A 185 149 0.5233 0.2432 0.3020 4.16e-05 3bh6:A, 3bh7:A, 1fzq:A, 4goj:A, 4goj:B, 7ok7:A, 7ok7:B, 7ok7:C, 7ok7:D, 7ok7:E, 7ok7:F, 4zi2:B, 4zi3:A, 4zi3:B
25 5di3:B 204 83 0.3256 0.1373 0.3373 2.01e-04 4m9q:A, 4m9q:B, 4m9q:C
26 2h57:B 167 153 0.4884 0.2515 0.2745 0.001 2h57:A, 2h57:C, 6vbv:3
27 4v0l:A 168 127 0.4419 0.2262 0.2992 0.002 4v0k:A, 4v0k:B, 4v0l:B, 4v0m:A, 4v0m:C, 4v0m:E, 4v0m:G, 4v0n:A, 4v0n:C, 4v0n:E, 4v0n:G, 4v0o:A, 4v0o:C, 4v0o:E, 4v0o:G
28 4bas:A 172 132 0.4419 0.2209 0.2879 0.012
29 6zga:C 168 74 0.2791 0.1429 0.3243 0.75 8bsh:B, 4bzi:B, 4bzi:J, 4bzi:K, 6gni:B, 1m2o:B, 1m2o:D, 2qtv:B, 6zga:G
30 8atu:A 2837 47 0.1977 0.0060 0.3617 1.8 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
31 8auw:A 2900 30 0.1512 0.0045 0.4333 5.7
32 6msb:c 287 35 0.1512 0.0453 0.3714 6.2 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
33 7ase:N 93 65 0.1977 0.1828 0.2615 7.0 5opt:n
34 4gsk:B 572 45 0.1395 0.0210 0.2667 7.3 4gsk:A
35 4gsl:A 598 45 0.1395 0.0201 0.2667 7.3 4gsl:B, 3rui:A, 3t7e:A, 3t7g:B, 3t7g:A, 3vh1:A, 3vh2:A, 3vh3:A, 3vh4:A, 5yec:A, 5yec:C
36 7vex:A 412 36 0.1512 0.0316 0.3611 9.0 8h4m:A
37 3k49:A 353 52 0.2093 0.0510 0.3462 9.1 3k49:C, 3k49:E, 3k4e:A, 3k4e:C, 3k4e:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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