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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LMTPYLQFNRHQWAALRDSVPMTLTEDEITRLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRI
PYIISIAGSVAVGKSTTARVLQALLSRWPEHRHVELITTDGFLHPNSVLKERGLMKKKGFPQSYDMHRLVKFVSDLKSGV
PQATAPVYSHLIYDVIPDGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEELLKSWYINRFLKF
REGAFTDPDSYFHNYAKLSKEEAVDIATSLWNEINLMNLKENILPTRERASLIMTKSANHSVNQVRLRK

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1esm:A 311 309 0.9126 0.9068 0.9126 0.0 1esm:B, 1esm:C, 1esm:D, 1esn:A, 1esn:B, 1esn:C, 1esn:D, 4f7w:A, 4f7w:C, 4f7w:B, 4f7w:D, 4f7w:E, 4f7w:F, 4f7w:G, 4f7w:H, 4gi7:A, 4gi7:C, 4gi7:B, 4gi7:D, 4gi7:E, 4gi7:F, 4gi7:G, 4gi7:H, 4ne2:A, 4ne2:B, 1sq5:A, 1sq5:B, 1sq5:C, 1sq5:D
2 3tqc:B 305 308 0.5372 0.5443 0.5390 1.96e-117 3tqc:A
3 2ges:A 308 311 0.5372 0.5390 0.5338 5.91e-117 3aez:A, 3af0:A, 3af1:A, 3af2:A, 3af3:A, 3avo:A, 3avq:A, 4bfs:A, 4bft:A, 4bft:B, 4bfu:A, 4bfu:B, 4bfv:A, 4bfv:B, 4bfw:A, 4bfw:B, 4bfx:A, 4bfx:B, 4bfy:A, 4bfy:B, 4bfz:A, 4bfz:B, 2get:A, 2geu:A, 2gev:A, 2zs7:A, 2zs8:A, 2zs9:A, 2zsa:A, 2zsb:A, 2zsd:A, 2zse:A, 2zsf:A
4 3asz:B 208 146 0.1392 0.2067 0.2945 1.08e-04 3asz:A, 3w34:A, 3w34:B, 3w8r:A, 3w8r:B
5 2uvq:A 211 129 0.1133 0.1659 0.2713 3.99e-04
6 6kev:A 317 159 0.1262 0.1230 0.2453 0.030
7 6n55:E 214 120 0.0971 0.1402 0.2500 0.036 6n53:A, 6n53:B, 6n54:A, 6n54:B, 6n55:D, 6n55:F, 6pwz:D, 6pwz:E, 6pwz:H, 7sql:A, 7sql:C, 7sql:B, 7sql:D, 1udw:A, 1udw:B, 1uei:A, 1uei:B, 1uej:A, 1uej:B, 1uj2:A, 1uj2:B, 1xrj:A, 1xrj:B
8 2p0e:A 190 65 0.0712 0.1158 0.3385 1.2 2qg6:A, 2ql6:A, 2ql6:E, 2ql6:B, 2ql6:C, 2ql6:F, 2ql6:D, 2ql6:G, 2ql6:H, 2ql6:I, 2ql6:M, 2ql6:J, 2ql6:K, 2ql6:L, 2ql6:N, 2ql6:O, 2ql6:P, 2qsy:A, 2qsz:A, 2qt0:A, 2qt1:A
9 2a2z:B 221 25 0.0388 0.0543 0.4800 1.4 2a2z:D, 2a30:B, 2a30:D, 3mjr:D, 2zi5:A, 2zi5:C, 2zi5:D, 2zi6:A, 2zi6:C, 2zi6:D, 2zi7:B, 2zi7:A, 2zia:A, 2zia:B
10 2no0:A 242 25 0.0388 0.0496 0.4800 3.3 2a2z:A, 2a2z:C, 2a30:A, 2a30:C, 2a7q:A, 3hp1:A, 3ipx:A, 3ipy:A, 3ipy:B, 4jlj:A, 4jlj:B, 4jlk:A, 4jlk:B, 4jlm:A, 4jlm:B, 4jln:A, 4jln:B, 4kcg:A, 4kcg:B, 3kfx:A, 3kfx:B, 4l5b:A, 4l5b:B, 3mjr:A, 3mjr:B, 3mjr:C, 5mqj:A, 5mqj:B, 5mqj:C, 5mqj:D, 5mql:A, 5mql:B, 5mql:C, 5mql:D, 5mqt:A, 5mqt:B, 5mqt:C, 5mqt:D, 2no0:B, 2no1:A, 2no1:B, 2no6:A, 2no6:B, 2no7:A, 2no7:B, 2no9:A, 2no9:B, 2noa:A, 2noa:B, 8ooj:A, 8ooj:B, 8ooj:C, 8ooj:D, 1p5z:B, 1p60:A, 1p60:B, 1p61:B, 1p62:B, 4q18:A, 4q18:B, 4q19:A, 4q19:B, 4q1a:A, 4q1a:B, 4q1b:A, 4q1b:B, 4q1c:A, 4q1c:B, 4q1d:A, 4q1d:B, 4q1e:A, 4q1e:B, 4q1f:A, 4q1f:B, 3qej:A, 3qej:B, 3qen:A, 3qen:B, 3qeo:A, 3qeo:B, 2qrn:A, 2qrn:B, 2qrn:C, 2qrn:D, 2qro:A, 2qro:B, 2qro:C, 2qro:D, 2zi3:A, 2zi3:B, 2zi4:A, 2zi5:B, 2zi6:B, 2zi9:A, 2zi9:B, 7zi1:A, 7zi2:A, 7zi3:A, 7zi5:A, 7zi6:A, 7zi7:A, 7zi8:A, 7zi9:A, 7zia:A, 7zib:A
11 7shf:A 296 40 0.0550 0.0574 0.4250 3.3
12 7she:A 541 40 0.0550 0.0314 0.4250 3.6 7she:B, 7shf:B
13 4jxr:B 185 148 0.1230 0.2054 0.2568 3.7
14 2px0:A 258 39 0.0485 0.0581 0.3846 3.9 2px0:B, 2px0:C, 2px0:D, 2px0:E, 2px0:F, 2px0:G, 2px0:H, 2px3:A, 3syn:A, 3syn:B, 3syn:C, 3syn:D
15 6y0f:C 722 41 0.0453 0.0194 0.3415 4.1 6y0f:A, 6y0f:B, 6y0f:D
16 4zmr:A 207 38 0.0550 0.0821 0.4474 4.5 4e7o:A, 4e7o:B, 4e7p:A, 4e7p:B, 4zmr:B, 4zms:A, 4zms:B
17 6vu9:A 631 105 0.0809 0.0396 0.2381 4.6
18 2ocp:A 229 28 0.0388 0.0524 0.4286 5.9 2ocp:B, 2ocp:C, 2ocp:D, 2ocp:E, 2ocp:F, 2ocp:G, 2ocp:H
19 6xji:C 290 62 0.0550 0.0586 0.2742 6.2 6xjh:C, 6xjh:D, 6xji:D
20 8esq:K 251 78 0.0712 0.0876 0.2821 7.7 8esr:K, 8etg:K, 8eth:K, 8eti:K, 8eup:K, 8euy:K, 8ev3:K
21 1aor:A 605 94 0.0906 0.0463 0.2979 8.4 1aor:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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