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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRV
VQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAI
IVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKY
IFAVAHRLFLPFPLPLFAYRWVARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTY
RWLSAEIEDVKPAKTVN

The query sequence (length=337) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xtb:J 337 337 1.0000 1.0000 1.0000 0.0 5xtd:J, 5xth:J, 5xti:J, 5xti:BJ
2 8ud1:1P 342 337 0.8309 0.8187 0.8309 0.0 5gpn:p, 5gup:L, 8ueo:1P, 8uep:1P, 8ueq:1P, 8uer:1P, 8ues:1P, 8uet:1P, 8ueu:1P, 8uev:1P, 8uew:1P, 8uex:1P, 8uey:1P, 8uez:1P, 8ugh:1P, 8ugi:1P, 8ugj:1P, 8ugn:1P, 8ugn:5P, 8ugr:1P, 8ugr:5P, 7v2c:J, 7v2e:J, 7v2h:J, 7v2k:J, 7v2r:J, 7v31:J, 7v33:J, 7vb7:J, 7vbn:J, 7vbz:J, 7vxp:J, 7vy8:J, 7vyf:J, 7vyn:J, 7vzv:J, 7vzw:J, 7w0r:J, 7w0y:J, 7w1t:J, 7w1u:J, 7w1v:J, 7w1z:J, 7w20:J, 7w2r:J, 7w2u:J, 7w2y:J, 7w31:J, 7w32:J, 7w35:J, 7w4c:J, 7w4d:J, 7w4e:J, 7w4f:J, 7w4g:J
3 8q0a:P 342 336 0.8042 0.7924 0.8065 0.0 7dgq:R, 7dgr:R, 7dgs:R, 7dgz:R, 7dh0:R, 7dkf:R2, 8q0f:P, 8q0j:P, 8q0m:P, 8q0o:P, 8q0q:P, 8q1p:P, 8q1u:P, 8q1y:P, 8q25:P, 8q45:P, 8q46:P, 8q47:P, 8q48:P, 8q49:P, 8q4a:P, 7qsd:P, 7qsk:P, 7qsl:P, 7qsm:P, 7qsn:P, 7qso:P, 7r41:P, 7r42:P, 7r43:P, 7r44:P, 7zdh:d, 7zdm:d, 7zeb:d, 6zkc:d, 6zkg:d, 6zkk:d, 6zko:d
4 7b93:P 342 337 0.7953 0.7836 0.7953 0.0 8c2s:P, 8ca3:P, 8ca5:P, 6g2j:P, 8iao:P, 8iap:P, 8ib4:P, 8ib5:P, 8ib9:P, 8iba:P, 8ibd:P, 8ibe:P, 8ic2:P, 8ic3:P, 8olt:P, 8om1:P, 7psa:P, 8pw5:P1, 8pw6:P1, 8pw7:P1, 8rgp:P, 8rgr:P, 6zr2:P, 6ztq:P
5 5lnk:d 314 334 0.7567 0.8121 0.7635 0.0 6q9d:A9, 6qa9:A9, 6qbx:A9, 6qc2:A9, 6qc3:A9, 6qc4:A9, 6qc5:A9, 6qc6:A9, 6qc7:A9, 6qc8:A9, 6qc9:A9, 6qca:A9, 6qcf:A9, 7r45:P, 7r46:P, 7r47:P, 7r48:P, 7r4c:P, 7r4d:P, 7r4f:P, 7r4g:P, 7zd6:d, 7zdj:d, 7zdp:d, 6zk9:d, 6zkd:d, 6zke:d, 6zkf:d, 6zkh:d, 6zki:d, 6zkj:d, 6zkl:d, 6zkm:d, 6zkn:d, 6zkp:d, 6zkq:d, 6zkr:d, 6zks:d, 6zkt:d, 6zku:d, 6zkv:d
6 7v2d:J 297 337 0.7359 0.8350 0.7359 1.71e-178 7v2f:J, 7v30:J, 7v32:J, 7v3m:J, 7vwj:J, 7vxu:J, 7vya:J, 7vyh:J, 7vz1:J, 7w00:J, 7w0h:J, 7w1o:J, 7w1p:J, 7w2k:J, 7w2l:J, 7w4j:J, 7w4k:J, 7w4l:J, 7w4m:J, 7w4n:J, 7w4q:J
7 8rgq:P 314 337 0.7478 0.8025 0.7478 1.40e-174 7ak5:P, 6g72:P, 8rgt:P
8 7ak6:P 288 337 0.6973 0.8160 0.6973 1.02e-155
9 8b9z:P 377 362 0.4926 0.4403 0.4586 5.25e-94 8ba0:P, 8esw:A9, 8esz:A9
10 8e73:A9 330 329 0.3828 0.3909 0.3921 3.28e-69 6x89:A9
11 7aqr:P 332 258 0.3650 0.3705 0.4767 2.20e-64 7a23:T, 7a24:T, 7ar7:P, 7ar8:P, 7arb:P, 8bee:P, 8bpx:P, 8bq5:P, 8bq6:P
12 7arc:P 347 242 0.2997 0.2911 0.4174 5.55e-61 7ard:P
13 7b0n:P 355 309 0.3264 0.3099 0.3560 1.60e-59 6gcs:E, 7o6y:E, 7o71:E, 6rfr:E, 6rfs:E, 6y79:E, 6yj4:P
14 7zm7:E 353 306 0.3383 0.3229 0.3725 2.11e-58 7zmb:E, 7zmg:E
15 6rfq:E 263 243 0.2671 0.3422 0.3704 6.60e-50
16 8iuf:A9 484 253 0.2463 0.1715 0.3281 1.33e-41 8j9h:A9, 8j9i:A9, 8j9j:A9
17 8gym:a9 340 240 0.2404 0.2382 0.3375 2.99e-30 8b6f:A1, 8bqs:A1, 8gym:A9, 8gzu:a9, 8gzu:A9, 7tgh:A9
18 6jkh:A 212 178 0.1246 0.1981 0.2360 0.060 6jkh:B
19 3rkr:A 221 49 0.0534 0.0814 0.3673 0.31 3rkr:B
20 8w0o:A 259 75 0.0475 0.0618 0.2133 0.80 8w0n:A, 8w0n:B, 8w0o:B, 8w0o:C, 8w0o:D, 8w0o:E, 8w0o:H, 8w0o:F, 8w0o:G
21 1g0o:C 281 36 0.0475 0.0569 0.4444 1.3 1doh:A, 1doh:B, 1g0n:A, 1g0n:B, 1g0o:A, 1g0o:B, 1g0o:D, 1ybv:A, 1ybv:B
22 4fj0:D 261 38 0.0445 0.0575 0.3947 1.7 4fiz:A, 4fj0:A, 4fj0:B, 4fj0:C, 4fj1:A, 4fj1:B, 4fj1:C, 4fj1:D, 4fj2:A, 4fj2:B, 4fj2:C, 4fj2:D, 3qwf:A, 3qwf:B, 3qwf:C, 3qwf:D, 3qwf:E, 3qwf:F, 3qwf:G, 3qwf:H, 3qwh:A, 3qwh:B, 3qwh:C, 3qwh:D, 3qwi:A, 3qwi:B, 3qwi:C, 3qwi:D
23 7pwg:N 204 59 0.0593 0.0980 0.3390 2.0 8br8:LO, 8brm:LO, 8bsi:LO, 8bsj:LO, 8btd:LO, 8btr:LO, 8fru:N, 7pwo:N2
24 7r39:A 412 62 0.0534 0.0437 0.2903 2.1 7r39:B, 7r39:C, 7r39:D, 7r39:E, 7r39:F, 7r39:G, 7r39:H
25 8b6g:CE 321 88 0.0564 0.0592 0.2159 3.2 8bqs:CE, 8gym:2e, 8gym:2E
26 2w8s:B 513 29 0.0415 0.0273 0.4828 3.4 2w8s:A, 2w8s:C, 2w8s:D
27 1eh2:A 95 50 0.0356 0.1263 0.2400 3.7 1f8h:A, 1ff1:A, 2jxc:A
28 1r66:A 322 125 0.0861 0.0901 0.2320 4.0 1r6d:A
29 3m2p:B 255 33 0.0445 0.0588 0.4545 4.2
30 7ena:PA 1475 25 0.0297 0.0068 0.4000 5.0 7b0y:A, 8b3d:A, 8b3f:A, 7enc:PA, 6gmh:A, 6gml:A, 8gxq:PA, 8gxs:PA, 7lbm:A, 5oik:A, 7oo3:A, 7oob:A, 7oop:A, 7opc:A, 7opd:A, 8p4a:A, 8p4b:A, 8p4c:A, 8p4d:A, 8p4e:A, 8p4f:A, 8s51:A, 8s52:A, 8s54:A, 8s55:A, 8uha:A, 8uhd:A, 8uis:A, 8w8e:A, 8w8f:A, 7ycx:1
31 6o9l:A 1476 25 0.0297 0.0068 0.4000 5.0 8a40:A, 8bvw:A, 8byq:A, 8bz1:A, 7edx:o, 7eg7:o, 7eg8:o, 7eg9:o, 7ega:o, 7egb:o, 7egc:o, 6exv:A, 5flm:A, 5iy6:A, 5iy7:A, 5iy8:A, 5iy9:A, 5iya:A, 5iyb:A, 5iyc:A, 5iyd:A, 7nvr:A, 7nvs:A, 7nvt:A, 7nvu:A, 7nvy:A, 7nvz:A, 7nw0:A, 8s5n:A, 8wak:o, 8wal:o, 8wan:o, 8wao:o, 8wap:o, 8waq:o, 8war:o, 8was:o, 8wat:o, 8wau:o, 8wav:o, 8waw:o, 8wax:o, 8way:o, 8waz:o, 8wb0:o, 6xre:A, 7zwd:A, 7zx7:A, 7zx8:A
32 4pzd:A 283 47 0.0504 0.0601 0.3617 5.9 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
33 3dwf:B 275 31 0.0326 0.0400 0.3548 8.9 3dwf:A, 3dwf:C, 3dwf:D, 3g49:A, 3g49:B, 3g49:C, 3g49:D, 3lz6:A, 3lz6:B, 3lz6:C, 3lz6:D, 1xse:A, 1xse:B
34 4k26:A 265 31 0.0326 0.0415 0.3548 9.5 3gmd:A, 3gmd:B, 3gmd:C, 3gmd:D, 3gmd:E, 3gmd:F, 3gmd:G, 3gmd:H, 4k26:B, 4nmh:A, 4nmh:B, 4nmh:C, 4nmh:D, 5pgz:A, 5pgz:B, 5qij:A, 5qij:B, 1y5m:A, 1y5m:B, 1y5r:A, 1y5r:B
35 2pk3:A 309 65 0.0445 0.0485 0.2308 10.0 2pk3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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