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BioLiP
>protein
LMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEWV

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oh9:L 96 44 1.0000 0.4583 1.0000 6.84e-28 5fz5:U, 6gyl:U, 6gym:U
2 5fmf:M 116 44 1.0000 0.3793 1.0000 1.07e-27 8cen:U, 8ceo:U, 7ml1:U, 7ml4:U, 1nh2:C, 7o4i:U, 7o4j:U, 7o72:U, 7o73:U, 7o75:U, 7oha:L, 5sva:d, 1ytf:C, 7zs9:U, 7zsa:U, 7zsb:U
3 6mzm:W 90 43 0.4773 0.2333 0.4884 2.74e-11 7zwc:U, 7zwd:U, 7zxe:U
4 7egd:Q 101 43 0.4773 0.2079 0.4884 2.84e-11 7egj:Q
5 7edx:Q 122 43 0.4773 0.1721 0.4884 3.69e-11 8bvw:U, 7eg7:Q, 7eg9:Q, 7ega:Q, 7ena:DQ, 5fur:C, 8gxq:DQ, 8gxs:DQ, 5iy6:N, 5iy7:N, 5iy8:N, 5iy9:N, 5iya:N, 5iyb:N, 5iyc:N, 5iyd:N, 7lbm:M, 1nvp:C, 7nvr:U, 7nvs:U, 7nvt:U, 7nvu:U, 7nvy:U, 7nvz:U, 7nw0:U, 6o9l:N, 8s51:U, 8s5n:U, 8wak:Q, 8wal:Q, 8wan:Q, 8wao:Q, 8wap:Q, 8waq:Q, 8war:Q, 8was:Q
6 6czy:A 362 40 0.2045 0.0249 0.2250 0.17 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
7 5ve9:C 74 34 0.2955 0.1757 0.3824 0.66
8 1jju:A 489 30 0.2273 0.0204 0.3333 0.73 1pby:A
9 6iql:A 341 42 0.3636 0.0469 0.3810 0.74 6iql:B
10 6ujd:A 406 27 0.2500 0.0271 0.4074 3.2
11 8bh3:C 668 21 0.1818 0.0120 0.3810 3.2 8bh3:L, 8bhy:C, 8bhy:L, 8bot:H, 8bot:U, 7k0y:C, 7nfc:H, 7sgl:C, 7z87:C, 7z88:C
12 6zhe:C 705 21 0.1818 0.0113 0.3810 3.2 8asc:B, 8asc:F, 8asc:L, 8asc:P, 6erf:B, 6erf:D, 6erf:F, 6erf:H, 6erg:E, 6erg:B, 6erh:B, 6erh:D, 8eza:K, 8eza:B, 8ezb:B, 8ezb:K, 1jey:B, 7k1k:C, 7lsy:B, 7lsy:K, 7lt3:B, 7lt3:K, 7nfe:C, 7su3:C, 5y3r:B, 7z6o:B, 6zha:C, 6zhe:H, 7zt6:B, 7zvt:B, 7zwa:B
13 8bhv:b 650 21 0.1818 0.0123 0.3810 3.4 8bhv:j, 8bot:C, 7zyg:B
14 7nfc:C 477 21 0.1818 0.0168 0.3810 4.0
15 5c79:A 104 39 0.2500 0.1058 0.2821 4.6 5c79:B
16 5z9t:A 499 22 0.2273 0.0200 0.4545 4.6 6a40:A, 7bz0:A, 5z9t:B
17 5xy3:H 192 15 0.2045 0.0469 0.6000 5.5
18 1yvu:A 682 30 0.2273 0.0147 0.3333 8.0
19 2f8s:A 704 30 0.2273 0.0142 0.3333 8.1 2f8t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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