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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LMDQPYSKTDFLMGTVVTLKIYDKGKEDVLDKGFDRIKDLAAKITTSDSEKTSEVDKINEQAGKKPVKVSEDVYYLIQEG
LKYSENSGGSFDITIGPLTSLWHIGFSDARKPSQAEIDAVLPLINYKDVKMNDKDQTVYLEKEGMELDLGAIAKGFITDE
TLKVFKENKVTTSIIDLGGNIYVQGNNPNGNKWNVGIQDPFSPRGSVIGKLPESNMSIVTSGIYERYLEVDGKTYHHILD
PKTGYPFDNDIAGVSIVSKKSIDGDGLSTATFSKGIKGGMDYIEQFEGVDAIFISKEKKVYETSGLKGQFELTDKDFQMD
TL

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7esa:A 322 322 1.0000 1.0000 1.0000 0.0 7esb:A, 7esc:A, 7f2u:A, 7f2u:B
2 4ifu:A 330 324 0.3354 0.3273 0.3333 6.86e-69 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
3 5mgy:H 316 307 0.2795 0.2848 0.2932 6.38e-35 5mgy:B, 5mgy:G, 5mgy:A, 5mgy:C, 5mgy:D, 5mgy:F
4 3pnd:C 323 257 0.2174 0.2167 0.2724 3.27e-34 3pnd:A, 3pnd:B, 3pnd:D
5 2o18:C 313 261 0.2174 0.2236 0.2682 2.44e-31 2o18:A, 2o18:B, 2o18:D, 4xgv:A, 4xgv:B, 4xgv:C, 4xgv:D, 4xgw:A, 4xgw:B, 4xgw:C, 4xgw:D, 4xgx:B
6 6nxi:A 309 241 0.2112 0.2201 0.2822 7.35e-29 6nxj:A, 6nxj:B
7 4xgx:A 290 259 0.1894 0.2103 0.2355 3.07e-22
8 2hk1:A 289 69 0.0776 0.0865 0.3623 1.9 2hk1:B, 2hk1:C, 2hk1:D
9 4g1b:A 398 36 0.0435 0.0352 0.3889 4.4 4g1b:B, 4g1b:C, 4g1b:D, 4g1v:A
10 6z1p:Av 206 90 0.0652 0.1019 0.2333 5.7
11 5en1:A 184 101 0.0807 0.1413 0.2574 7.8 8hni:A, 8hni:B, 8hni:G, 8hni:I, 8hni:H, 8hni:E, 8hni:K, 8hni:C, 8hni:D, 8hni:J, 8hni:F, 8hni:L, 5ho4:A, 7wm3:A, 7wm3:B, 7wm3:C, 7wm3:D, 5wwe:A, 5wwf:A, 5wwf:C, 5wwg:A
12 3vjr:A 193 44 0.0497 0.0829 0.3636 9.6 3vjr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218