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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARL
AIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGE
IYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAI
VKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRG
VEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQ
ERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAIL
AVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGA
CPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI
KASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF
GVKTLYYQNTRD

The query sequence (length=732) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vhu:A 743 732 0.9973 0.9825 0.9973 0.0 5cns:A, 5cns:B, 5cns:C, 5cns:D, 5cnt:A, 5cnt:B, 5cnt:C, 5cnt:D, 5cnu:A, 5cnu:B, 5cnu:C, 5cnu:D, 5cnv:A, 5cnv:B, 5cnv:C, 5cnv:D, 4erm:A, 4erm:B, 4erm:C, 4erm:D, 4erp:A, 4erp:B, 4erp:C, 4erp:D, 1r1r:A, 1r1r:B, 1r1r:C, 2r1r:A, 2r1r:B, 2r1r:C, 3r1r:A, 3r1r:B, 3r1r:C, 4r1r:A, 4r1r:B, 4r1r:C, 5r1r:A, 5r1r:B, 5r1r:C, 6r1r:A, 6r1r:B, 6r1r:C, 7r1r:A, 7r1r:B, 7r1r:C, 3uus:A, 3uus:B, 3uus:C, 3uus:D, 8vhn:A, 8vhn:B, 8vho:A, 8vho:B, 8vhp:A, 8vhp:B, 8vhp:C, 8vhp:D, 8vhp:E, 8vhp:F, 8vhp:G, 8vhp:H, 8vhq:A, 8vhq:B, 8vhq:C, 8vhq:D, 8vhr:A, 8vhr:B, 8vhr:C, 8vhr:D, 8vhu:B, 6w4x:A, 6w4x:B, 2x0x:A, 2x0x:B, 2x0x:C, 2xak:A, 2xak:B, 2xak:C, 2xap:A, 2xap:B, 2xap:C, 2xav:A, 2xav:B, 2xav:C, 2xaw:A, 2xaw:B, 2xaw:C, 2xax:A, 2xax:B, 2xax:C, 2xay:A, 2xay:B, 2xay:C, 2xaz:A, 2xaz:B, 2xaz:C, 2xo4:A, 2xo4:B, 2xo4:C, 2xo5:A, 2xo5:B, 2xo5:C
2 7mdi:A 734 732 0.7746 0.7725 0.7746 0.0 7mdi:B, 7mdi:D, 7mdi:C
3 7agj:A 731 769 0.3292 0.3297 0.3134 4.08e-100 7agj:B
4 5im3:A 874 683 0.2719 0.2277 0.2914 1.13e-75 5im3:B
5 6aui:A 745 777 0.2923 0.2872 0.2754 2.50e-69 6aui:B, 6aui:C, 6aui:D, 6aui:E, 6aui:F, 3hnc:A, 3hnc:B, 3hnd:A, 3hnd:B, 3hne:A, 3hne:B, 3hnf:A, 3hnf:B, 6l3r:A, 6l3r:E, 6lkm:A, 6lkm:B, 5tus:A, 5tus:B, 2wgh:B, 4x3v:A, 4x3v:B
6 3s8c:A 666 704 0.2691 0.2958 0.2798 7.38e-62 2cvu:A, 2cvv:A, 2cvw:A, 2cvx:A, 2cvy:A, 2eud:A, 3k8t:A, 3s87:A, 3s8a:A, 3s8b:A, 3tb9:A, 3tba:A, 2zlf:A, 2zlg:A, 1zzd:A
7 2cvt:A 637 674 0.2582 0.2967 0.2804 1.57e-60
8 6l7l:A 644 688 0.2568 0.2919 0.2733 4.39e-60 6l7l:E, 2wgh:A
9 3rsr:A 610 630 0.2295 0.2754 0.2667 1.48e-49
10 1peu:A 692 558 0.1858 0.1965 0.2437 2.28e-35 2bq1:E, 2bq1:F, 1peo:A, 1peq:A
11 6mve:A 680 586 0.1844 0.1985 0.2304 5.35e-32 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
12 1xje:A 627 438 0.1421 0.1659 0.2374 3.84e-20 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
13 3o0n:A 607 438 0.1366 0.1647 0.2283 1.52e-16 1xjm:B
14 3sae:A 780 103 0.0369 0.0346 0.2621 0.28 3sdr:A, 3sdt:A, 3sdu:A, 3sdv:A
15 6ogz:A 1082 32 0.0178 0.0120 0.4062 0.35 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
16 7b9p:A 899 308 0.0970 0.0790 0.2305 1.8
17 7b9q:A 868 308 0.0970 0.0818 0.2305 2.3 7b9q:B
18 6a1i:A 522 126 0.0492 0.0690 0.2857 3.5 6a1d:A, 6a1e:A, 6a3x:A, 7e9r:B, 7e9r:C, 6k16:A, 6o9p:A
19 8fxu:A 310 78 0.0314 0.0742 0.2949 4.7
20 7fix:B1 740 50 0.0219 0.0216 0.3200 5.7 7bw2:B, 4fe1:B, 7fix:B2, 7fix:B3, 1jb0:B, 6k33:aB, 6k33:bB, 6k33:cB, 7m75:B, 7m76:B, 7m78:B, 3pcq:B, 6pfy:H, 6pfy:B, 6pfy:Z, 6pgk:H, 6pgk:B, 6pgk:Z, 6tra:B, 6trc:B, 6trc:b, 6trc:2, 6trd:B, 6trd:b, 6trd:2, 5zf0:B1, 5zf0:B2, 5zf0:B3, 5zf0:B4, 5zf0:B6, 5zf0:B5
21 6lu1:B 713 50 0.0219 0.0224 0.3200 5.8
22 6kmw:aB 740 50 0.0219 0.0216 0.3200 6.3 6kmw:cB, 6kmw:bB
23 3r42:A 156 60 0.0232 0.1090 0.2833 8.8 3r3q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218