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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSF
CRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMR
LL

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ybu:E 168 162 1.0000 0.9643 1.0000 4.99e-119 6ybu:F, 6ybu:K, 6ybu:L
2 6ybb:F 280 162 0.9012 0.5214 0.9012 4.44e-101 6tj0:A, 6tj0:B, 6ybb:E
3 8bx8:C 3947 32 0.0802 0.0033 0.4062 0.97 7k58:C, 7k5b:C, 7kek:C
4 6fze:A 209 31 0.0679 0.0526 0.3548 3.7 6fxe:A, 6fxe:B, 6fze:B
5 4yu3:B 146 42 0.0988 0.1096 0.3810 3.8 4yu4:B, 4yu4:D
6 1fdh:G 146 30 0.0802 0.0890 0.4333 4.5 1fdh:H, 1i3d:A, 1i3d:B, 1i3e:A, 1i3e:B, 4mqj:B, 4mqj:H, 4mqj:D, 4mqj:F, 4mqk:B, 4mqk:D, 4mqk:F, 4mqk:H, 7qu4:G, 7qu4:H
7 4fvv:B 415 46 0.0802 0.0313 0.2826 5.2 4isq:C, 4isq:A, 4isq:B, 4isr:A, 4isr:B, 4isr:C, 5lr0:A, 5lr0:B
8 5z56:A 2232 14 0.0494 0.0036 0.5714 9.8 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
9 8c6j:A 2261 14 0.0494 0.0035 0.5714 9.8 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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