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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHAGDVIVWDRGAWTP
LDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQSQWFLVKAKDGEARSLDRFDVLKERPDSVLS

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3n9b:B 157 149 0.9865 0.9299 0.9799 5.26e-103 3n9b:A, 3n9d:A
2 5dmp:A 169 156 0.5000 0.4379 0.4744 7.03e-41
3 3p43:A 124 124 0.4257 0.5081 0.5081 2.03e-36
4 3p4h:A 118 125 0.3784 0.4746 0.4480 7.42e-30 3ta5:A, 3ta7:A
5 8t5j:A 154 71 0.1149 0.1104 0.2394 0.87
6 7oya:C1 348 58 0.1284 0.0546 0.3276 1.1 7oyb:C1
7 7r81:F1 360 35 0.0946 0.0389 0.4000 1.8
8 4qvh:A 596 90 0.1486 0.0369 0.2444 2.5 6ct5:A, 6ct5:B, 7ed0:A, 8gkf:A, 8gkf:B, 8gkf:C, 8gkf:D, 8gkf:E, 8gkf:H, 8gkf:I, 7n8e:A, 7n8e:B, 7n8l:A, 7n8l:B, 7n8m:A, 7n8m:B, 4qjk:A, 4qvh:B, 8qzi:A, 8qzi:B, 8qzi:C, 8qzi:D, 8qzj:A, 8qzj:B, 8qzj:C, 8qzj:D, 4u89:A
9 8bz6:A 606 30 0.0878 0.0215 0.4333 3.2 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
10 8gkf:G 197 94 0.1757 0.1320 0.2766 3.2
11 5tzs:T 749 32 0.0811 0.0160 0.3750 3.5
12 5wyj:BE 753 32 0.0811 0.0159 0.3750 3.5 5wyk:BE
13 6lqs:BE 823 32 0.0811 0.0146 0.3750 3.7 7d63:BE, 6lqr:BE, 6lqt:BE, 6lqv:BE, 6nd4:T
14 7olc:LC 363 35 0.0946 0.0386 0.4000 3.7 8i9p:LC, 8i9r:LC, 8i9t:LC, 8i9v:LC, 8i9w:LC, 8i9x:LC, 8i9y:LC, 8i9z:LC, 8ia0:LC, 7old:LC, 8oo0:LC, 8pv1:LC, 8pv2:LC, 8pv3:LC, 8pv4:LC, 8pv5:LC, 8pv6:LC, 8pv7:LC, 8pv8:LC, 8pvk:LC, 8pvl:LC, 7z3n:LC, 7z3o:LC
15 7qep:L4 329 43 0.0946 0.0426 0.3256 3.8
16 7d5s:BE 865 32 0.0811 0.0139 0.3750 3.9 7ajt:UU, 6ke6:BE, 6lqp:BE, 6lqq:BE, 6lqu:BE, 7suk:LT, 5wlc:LT, 6zqa:UU, 6zqb:UU, 6zqc:UU
17 7d4i:BE 890 32 0.0811 0.0135 0.3750 4.2 7aju:UU, 6zqd:UU, 6zqf:UU
18 4biv:A 269 47 0.1014 0.0558 0.3191 5.1 4biu:C, 4biu:E, 4biu:F, 4biv:B, 4biw:A, 4biw:B, 4bix:A, 4biy:A, 4biy:C, 4biz:A, 4biz:C, 4biz:E, 4biz:F, 4cb0:A, 4cb0:B, 5lfk:A, 5lfk:B
19 8df7:A 850 33 0.1081 0.0188 0.4848 5.6 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
20 1eba:A 212 30 0.0811 0.0566 0.4000 5.8 1eba:B, 1ebp:A, 1ebp:B
21 3hia:B 83 33 0.0743 0.1325 0.3333 5.8 3hia:A, 3hia:C
22 6r4z:A 198 113 0.1959 0.1465 0.2566 6.4 5a0p:A, 5a0p:B, 5a0r:A, 5a0r:B, 5a0s:A, 5a0s:B, 5a0x:A, 5a0x:B, 5n12:A, 5n12:B, 2n6j:A, 6r4w:B, 6r4w:A, 6r4x:B, 6r4x:A, 6r4y:B, 6r4y:A, 6r4z:B, 6r50:B, 6r50:A, 6r51:B, 6r51:A, 6r51:C, 6r52:A, 6r52:B, 6r53:A, 6r53:B, 6r54:A, 6r54:B, 6r55:A, 6r55:B, 6r56:A, 6r56:B, 6r57:A, 6r57:B, 6r58:A, 6r58:B, 6r58:C, 6r58:D, 6r59:A, 6r59:B, 6r5a:A, 6r5a:B, 6r5b:B, 6r5b:A, 6r5c:A, 6r5c:B
23 4v6w:CC 392 36 0.0676 0.0255 0.2778 8.0 6xu6:CC, 6xu7:CC, 6xu8:CC
24 7ed1:A 223 30 0.0743 0.0493 0.3667 9.7 7ed1:B, 7ed2:A, 7ed2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218