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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LLQIQPHFHVEVIEPKQVYLLGEQANHALTGQLYCQILPLLNGQYTLEQIVEKLDGEVPPEYIDYVLERLAEKGYLTEAA
PELSSEVAAFWSELGIAPPVAAEALRQPVTLTPVGNISEVTVAALTTALRDIGISVQTALNVVLTDDYLQPELAKINKQA
LESQQTWLLVKPVGSVLWLGPVFVPGKTGCWDCLAHRLRGNREVEASVLRQKQAQGCLPTARATLPSTLQTGLQFAATEI
AKWIVKYHVNATAPGTVFFPTLDGKIITLNHSILDLKSHILIKRSQCPTCGDPKILQHRGFEPLKLESRPKQGHRGTTPE
QTVQKYQHLISPVTGVVTELVRITDPANPLVHTYRAGHSFGSATSLRGLRNTLKHKSSGKGKTDSQSKASGLCEAVERYS
GIFQGDEPRKRATLAELGDLAIHPEQCLCFSDGQYANRETLNEQATVAHDWIPQRFDASQAIEWTPVWSLTEQTHKYLPT
ALCYYHYPLPPEHRFARGDSNGNAAGNTLEEAILQGFMELVERDGVALWWYNRLRRPAVDLGSFNEPYFVQLQQFYREND
RDLWVLDLTADLGIPAFAGVSNRKTGSSERLILGFGAHLDPTIAILRAVTEVNQIGLELDKVPDENLKSDATDWLITEKL
ADHPYLLPDTTQPLKTAQDYPKRWSDDIYTDVMTCVNIAQQAGLETLVIDQTRPDIGLNVVKVTVPGMRHFWSRFGEGRL
YDVPVKLGWLDEPLTEAQMNPTPMPF

The query sequence (length=746) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v1t:B 753 754 0.9960 0.9867 0.9854 0.0 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
2 4bs9:A 691 749 0.7426 0.8017 0.7397 0.0
3 7u58:A 651 681 0.5228 0.5991 0.5727 0.0 7u58:B
4 6peu:B 385 413 0.1354 0.2623 0.2446 1.82e-22 6pe3:A, 6peu:A, 6peu:C, 6peu:D
5 6ci7:A 365 428 0.1340 0.2740 0.2336 2.22e-12 6ci7:B, 6ci7:C, 6ci7:D, 6ci7:E, 6ci7:F, 6cib:A, 6cib:B, 6cib:C, 6cib:D, 6cib:E, 6cib:F
6 3h5a:C 358 38 0.0188 0.0391 0.3684 0.002 3h5a:A, 3h5a:B, 3h5a:D, 3h5n:A, 3h5n:B, 3h5n:C, 3h5n:D, 3h5r:A, 3h5r:B, 3h5r:C, 3h5r:D, 3h9g:A, 3h9g:B, 3h9g:C, 3h9g:D, 3h9j:A, 3h9j:B, 3h9j:C, 3h9j:D, 3h9q:A, 3h9q:B, 3h9q:C, 3h9q:D, 6om4:A, 6om4:B
7 4q86:B 583 231 0.0751 0.0961 0.2424 0.82 4q85:A, 4q85:B, 4q85:C, 4q85:D, 4q85:E, 4q85:G, 4q85:H, 4q86:A, 4q86:C, 4q86:D, 4q86:E, 4q86:G, 4q86:H
8 6gaw:Bi 260 81 0.0268 0.0769 0.2469 3.0 5aj4:Bi, 6gb2:Bi, 7nqh:Bi, 7nql:Bi, 7nsh:Bi, 7nsi:Bi, 7nsj:Bi, 8oin:Bu, 8oiq:Bu, 6ydp:Bi, 6ydw:Bi
9 6pe2:A 456 45 0.0188 0.0307 0.3111 4.0 6p5a:A, 6p5a:G, 6pe2:G
10 5ndd:A 567 81 0.0255 0.0335 0.2346 4.7 5awi:A, 5awi:B, 2bc5:A, 2bc5:B, 2bc5:C, 2bc5:D, 3c62:A, 3c62:B, 3c62:C, 3c62:D, 3de8:A, 3de8:D, 3de8:B, 3de8:C, 3de9:A, 8drd:A, 8drd:B, 8drf:A, 8drj:C, 8drl:A, 8drm:A, 6dy4:D, 6dy4:A, 6dy6:A, 6dy6:B, 6dyb:A, 6dyb:C, 6dyc:A, 6dyc:B, 6dyd:A, 6dyd:C, 6dye:A, 6dye:B, 6dyi:B, 6dyj:A, 6dyj:E, 6dyj:C, 6dyj:G, 6dyk:A, 6dyk:E, 6dyk:C, 6dyk:G, 6dyl:A, 6dyl:E, 6dyl:C, 6dyl:G, 3foo:A, 3foo:B, 3foo:C, 3foo:D, 3foo:E, 3foo:F, 3foo:G, 3foo:H, 3foo:I, 3foo:J, 3foo:L, 3foo:K, 3fop:A, 3fop:B, 3l1m:A, 5ndz:A, 3nmi:A, 3nmi:B, 3nmi:C, 3nmi:D, 3nmi:E, 3nmi:F, 3nmj:A, 3nmj:C, 3nmj:B, 3nmj:D, 3nmk:A, 3nmk:C, 3nmk:B, 3nmk:D, 2qla:A, 2qla:B, 2qla:C, 2qla:D, 6wza:A, 6wza:B, 6wza:C, 6x8x:A
11 7odr:d 259 48 0.0188 0.0541 0.2917 4.7 8any:d, 7l08:d, 7l20:d, 7o9k:d, 7odt:d, 8oir:Bu, 8oit:Bu, 8pk0:d, 7po4:d, 7qi4:d, 7qi5:d, 7qi6:d, 8qsj:d, 6vlz:d, 6vmi:d, 6zm5:d, 6zm6:d
12 3hm7:B 437 40 0.0214 0.0366 0.4000 7.1 3hm7:A, 3hm7:C, 3hm7:D, 3hm7:E, 3hm7:F
13 6klc:A 1436 39 0.0201 0.0104 0.3846 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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