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BioLiP
>protein
LLQHVKFQSSNFENILTWDGGPASTSDTVYSVEYKKYGERKWLAKAGCQRITQKFCDLTMETRDHQEFYYAKVTAVSAGG
PPVTKMTDRFSSLQHTTIKPPDVTCIPKVRSIQMLVHPTLTPVLSEDGHQLTLEEIFHDLFYRLELHVNHTYQMHLEGKQ
REYEFLGLTPDTEFLGSITILTPILSKESAPYVCRVKTLPD

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6weo:7 201 201 1.0000 1.0000 1.0000 1.55e-152 6weo:F, 6weo:M, 6weo:V
2 3dgc:R 202 201 0.7910 0.7871 0.7910 2.50e-119
3 3ela:T 191 153 0.2090 0.2199 0.2745 1.03e-04
4 6weo:O 196 146 0.1542 0.1582 0.2123 0.024 6weo:K, 6weo:C
5 6e3k:E 213 68 0.1095 0.1033 0.3235 0.031 6e3k:I, 6e3l:E, 6e3l:I, 5eh1:A
6 6wqz:C 536 132 0.1692 0.0634 0.2576 0.26 6wqz:B, 6wqz:A, 6wr4:A, 6wr4:B, 6wr4:C
7 8u41:B 451 55 0.0846 0.0377 0.3091 0.53 8u41:A, 8u42:A, 8u42:B, 8ux5:A, 8ux5:B
8 2c1g:A 384 89 0.1144 0.0599 0.2584 5.2 2c1i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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