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BioLiP
>protein
LLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cwr:B 109 68 1.0000 0.6239 1.0000 2.45e-43 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
2 6bzo:F 326 68 1.0000 0.2086 1.0000 1.50e-41 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
3 8k60:F 315 68 0.9118 0.1968 0.9118 4.05e-38 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
4 7ckq:F 272 67 0.6765 0.1691 0.6866 1.48e-27 7f75:F, 8x6f:E
5 8gzg:F 314 68 0.6176 0.1338 0.6176 1.95e-24 8gzh:F
6 8h3v:G 314 68 0.6176 0.1338 0.6176 9.53e-24 8h40:G
7 7l7b:F 272 67 0.5882 0.1471 0.5970 8.96e-23
8 7rdq:F 349 68 0.5588 0.1089 0.5588 1.28e-17 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
9 3iyd:F 479 62 0.5147 0.0731 0.5645 3.40e-17
10 6n60:F 318 67 0.5294 0.1132 0.5373 3.83e-17 8igr:L, 8igs:L
11 6n4c:F 558 62 0.5147 0.0627 0.5645 5.31e-17 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
12 6psr:L 548 62 0.5147 0.0639 0.5645 5.57e-17 6n58:L, 6n61:F
13 8u3b:F 431 62 0.5147 0.0812 0.5645 5.90e-17
14 4kn7:X 517 62 0.5147 0.0677 0.5645 6.06e-17
15 7ye1:F 497 66 0.5000 0.0684 0.5152 1.03e-15 7ye2:F, 5yix:A
16 6wmr:Z 470 66 0.4853 0.0702 0.5000 4.60e-14 6wmt:Z
17 7ubm:F 353 54 0.4118 0.0793 0.5185 3.28e-12 7ubn:F
18 7f0r:F 278 60 0.3529 0.0863 0.4000 1.47e-07
19 8hkc:E 262 58 0.3235 0.0840 0.3793 3.40e-06
20 6ido:A 86 64 0.3529 0.2791 0.3750 4.91e-06 6ido:B
21 6omf:F 278 67 0.3676 0.0899 0.3731 1.16e-05 5ipl:F, 5ipm:F, 5ipn:F, 6kj6:F, 6utv:FFF, 6utw:FFF, 6utx:FFF, 6uty:FFF, 6utz:FFF, 6uu0:FFF, 6uu1:FFF, 6uu2:FFF, 6uu3:FFF, 6uu4:FFF, 6uu5:FFF, 6uu6:FFF, 6uu7:FFF, 6uu8:FFF, 6uu9:FFF, 6uua:FFF, 6uub:FFF, 6uuc:FFF
22 6pfv:G 223 54 0.3676 0.1121 0.4630 3.17e-05 6pfj:A, 6pfv:A, 6pfv:D
23 7l5s:A 771 52 0.2500 0.0220 0.3269 0.017 7l5i:A
24 7lq4:A 192 62 0.3529 0.1250 0.3871 0.045
25 6pmi:F 239 60 0.2794 0.0795 0.3167 0.22 6pmj:F
26 8hhl:A 592 22 0.1765 0.0203 0.5455 0.59 8hhm:A
27 8hio:A 567 22 0.1765 0.0212 0.5455 0.65
28 8bvf:B 403 23 0.1618 0.0273 0.4783 0.98 8bvf:A
29 8p0j:H 382 46 0.2353 0.0419 0.3478 1.3 8p0k:H, 8p0n:H
30 1eu1:A 767 27 0.1324 0.0117 0.3333 3.2
31 4cw5:B 438 29 0.1618 0.0251 0.3793 4.3 4cw5:A
32 4udq:A 525 26 0.1618 0.0210 0.4231 4.3 6f97:A, 6f97:B, 4udp:A, 4udp:B, 4udq:B, 4udr:A, 4udr:B
33 7pzb:A 227 24 0.1618 0.0485 0.4583 5.2 7pza:A, 7pza:B, 7pzb:B
34 2g4o:A 337 36 0.1471 0.0297 0.2778 5.5 2g4o:D
35 7oyl:A 557 42 0.2206 0.0269 0.3571 6.5
36 6qec:A 65 37 0.1765 0.1846 0.3243 7.7 5lxu:A
37 4a8f:B 664 17 0.1471 0.0151 0.5882 8.7 4a8f:A, 4a8f:C, 4a8k:B, 4a8k:A, 4a8k:C, 4a8m:Q, 4a8m:P, 4a8m:R, 4a8o:A, 4a8o:B, 4a8o:C, 4a8q:A, 4a8q:B, 4a8q:C, 4a8s:A, 4a8s:B, 4a8s:C, 4a8w:A, 4a8w:B, 4a8w:C, 4a8y:A, 4a8y:B, 4a8y:C, 4b02:A, 4b02:B, 4b02:C, 5fj6:A, 5fj7:C, 1hhs:A, 1hhs:B, 1hhs:C, 1hht:P, 1hht:Q, 1hht:R, 1hi0:P, 1hi0:Q, 1hi0:R, 1hi1:A, 1hi1:B, 1hi1:C, 1hi8:A, 1hi8:B, 2jlf:A, 2jlf:B, 2jlg:A, 2jlg:B, 2jlg:C, 1uvi:A, 1uvi:B, 1uvi:C, 1uvj:A, 1uvj:B, 1uvj:C, 1uvk:A, 1uvk:C, 1uvk:E, 1uvl:A, 1uvl:C, 1uvl:E, 1uvm:A, 1uvm:B, 1uvm:C, 1uvn:A, 1uvn:C, 1uvn:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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