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BioLiP
>protein
LLPEVTEEDQGRICVVIDLDETLVHSSFKPIADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYAD
PVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPI
FEELSGAEDVYTSLGQLR

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q5e:A 181 180 1.0000 0.9834 0.9889 1.85e-129 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
2 1t9z:A 181 178 0.7584 0.7459 0.7584 6.79e-101 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
3 2hhl:C 184 167 0.7921 0.7663 0.8443 6.24e-100 2hhl:A, 2hhl:D
4 8ujm:B 237 169 0.3989 0.2996 0.4201 1.01e-40 8ujm:A
5 4qqf:F 191 156 0.3202 0.2984 0.3654 6.99e-29 3qle:A
6 3ef1:A 372 108 0.1461 0.0699 0.2407 9.82e-06 3ef0:A, 4xpz:A, 4xq0:A
7 5ave:A 252 68 0.1180 0.0833 0.3088 0.15 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
8 4avn:A 420 54 0.1067 0.0452 0.3519 0.27 4avo:A, 4b4f:A, 4b4f:B
9 3shq:A 299 176 0.2247 0.1338 0.2273 0.45
10 2zu8:A 373 54 0.0843 0.0402 0.2778 0.66 2zu8:B, 2zu9:B, 2zu9:A
11 6h3o:F 650 74 0.1180 0.0323 0.2838 2.4 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
12 1u1h:A 746 93 0.1404 0.0335 0.2688 2.5 1u1j:A, 1u1u:A, 1u22:A
13 2ilu:A 477 104 0.1629 0.0608 0.2788 2.5 2imp:A, 2opx:A
14 6m1w:A 354 55 0.1067 0.0537 0.3455 3.2 8ful:A, 8ful:C, 8ful:E, 8ful:G, 8fum:A, 8fum:C, 8fum:E, 8fum:G, 8fun:A, 8fun:C, 8fuo:A, 8fuo:C, 6m2i:A
15 3o8o:E 752 24 0.0618 0.0146 0.4583 3.9 3o8o:A, 3o8o:C, 3o8o:G
16 2lcq:A 161 72 0.1404 0.1553 0.3472 5.9
17 6a30:A 527 98 0.1404 0.0474 0.2551 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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