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BioLiP
>protein
LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKE

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d59:I 108 47 1.0000 0.4352 1.0000 1.47e-30 7a6h:I, 7ae1:I, 7ae3:I, 7aea:I, 7dn3:I, 7du2:I, 7fji:I, 7fjj:I, 8ity:I, 8iue:I, 8iuh:I
2 6scx:A 328 35 0.2979 0.0427 0.4000 0.023 6o3p:A, 6scx:B, 6scx:C
3 6o3p:B 320 35 0.2979 0.0437 0.4000 0.024
4 5fj9:I 92 30 0.2553 0.1304 0.4000 0.040 5fja:I
5 7z0h:I 110 49 0.3617 0.1545 0.3469 0.043 8bws:I, 6cnb:I, 6cnc:I, 6cnd:I, 6cnf:I, 6eu0:I, 6eu1:I, 6eu2:I, 6eu3:I, 6f40:I, 6f41:I, 6f42:I, 5fj8:I, 6tut:I, 7z1l:I, 7z1m:I, 7z1o:I, 7z2z:I, 7z30:I, 7z31:I
6 2k4x:A 55 28 0.2553 0.2182 0.4286 0.20
7 6tmf:Z 50 29 0.2553 0.2400 0.4138 0.26
8 1zt2:A 327 29 0.2553 0.0367 0.4138 0.39 5of3:A, 5of3:D, 5ofn:A, 1zt2:C
9 4zyn:B 385 14 0.2128 0.0260 0.7143 0.60 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
10 5caw:C 315 26 0.2553 0.0381 0.4615 1.7 5caw:A
11 5jb3:Y 50 29 0.2128 0.2000 0.3448 2.1 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
12 6djw:A 317 27 0.2979 0.0442 0.5185 2.5 6djx:A
13 7oqy:Y 92 31 0.2128 0.1087 0.3226 3.3
14 2m48:A 141 27 0.2979 0.0993 0.5185 4.0 9c5e:A, 2lwr:A
15 8dyu:A 2562 17 0.1915 0.0035 0.5294 5.6 8dyv:A
16 4h6d:B 329 36 0.2553 0.0365 0.3333 5.6 4h67:B, 4h6d:A, 4h6d:E, 4h6d:H
17 8jd6:R 774 27 0.2340 0.0142 0.4074 6.1 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S
18 2rhp:A 622 9 0.1489 0.0113 0.7778 6.6 1yo8:A
19 1c7s:A 858 12 0.1702 0.0093 0.6667 7.5 1c7t:A
20 5b48:B 286 16 0.1915 0.0315 0.5625 7.6
21 5yyl:B 375 28 0.2340 0.0293 0.3929 8.3
22 2vhd:A 323 16 0.1915 0.0279 0.5625 8.7 1eb7:A, 2vhd:B
23 6zj3:LW 208 19 0.1915 0.0433 0.4737 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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