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BioLiP
>protein
LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wj2:A 71 63 1.0000 0.8873 1.0000 2.70e-43 2lex:A
2 8k31:B 79 62 0.8095 0.6456 0.8226 6.32e-34
3 2ayd:A 76 62 0.6825 0.5658 0.6935 1.98e-31
4 8iex:A 88 61 0.5873 0.4205 0.6066 5.46e-22
5 7z0r:A 81 59 0.5238 0.4074 0.5593 9.75e-22 7z0r:B, 7z0u:A
6 6j4f:B 63 60 0.5556 0.5556 0.5833 2.28e-19 6j4f:F
7 7d11:A 79 62 0.5238 0.4177 0.5323 3.75e-19 6j4e:B
8 6j4g:B 58 59 0.5238 0.5690 0.5593 6.34e-17
9 5w3x:D 73 68 0.4603 0.3973 0.4265 3.97e-14 7p8k:B, 5w3x:B
10 6ir8:A 69 59 0.3810 0.3478 0.4068 6.97e-12
11 6nwz:A 665 21 0.1429 0.0135 0.4286 1.1
12 8j62:C 127 37 0.2063 0.1024 0.3514 1.6 8e40:B, 8j62:G
13 4n9f:b 172 38 0.2063 0.0756 0.3421 2.5 8fvi:1, 8fvj:1, 8fvj:6, 8h0i:C, 8h0i:E, 8h0i:G, 8h0i:I, 8j62:E, 8j62:I, 4n9f:G, 4n9f:M, 4n9f:S, 4n9f:d, 4n9f:j, 4n9f:p, 4n9f:v, 4n9f:1, 4n9f:7, 4n9f:q, 4n9f:2
14 3chl:A 315 48 0.2222 0.0444 0.2917 3.8 3chj:A, 3chk:A
15 2z71:C 331 54 0.2540 0.0483 0.2963 5.0 2z71:A
16 6sh3:A 376 44 0.2381 0.0399 0.3409 5.1 6sh3:B, 6sh3:C, 6sh3:D, 6sh3:E, 6sh3:F, 6sh3:G
17 6r4o:A 841 44 0.2222 0.0166 0.3182 5.6
18 7cms:A 328 38 0.1429 0.0274 0.2368 8.6 7cki:A, 7cms:B, 5dk4:A, 7eer:A, 7eer:B, 7eer:C, 7eer:D, 1i6k:A, 1i6l:A, 1i6m:A, 1m83:A, 1mau:A, 1maw:A, 1maw:B, 1maw:C, 1maw:D, 1maw:E, 1maw:F, 1mb2:A, 1mb2:B, 1mb2:C, 1mb2:D, 1mb2:E, 1mb2:F, 2ov4:A
19 8qj5:A 412 25 0.1587 0.0243 0.4000 9.4
20 8ejo:A 56 31 0.1429 0.1607 0.2903 9.6 8ejo:B, 8ejp:A, 8ejp:B
21 6pv0:A 31 11 0.1270 0.2581 0.7273 9.7 6pv1:A, 6pv2:A, 6pv3:A, 1sp2:A, 6uco:A, 6ucp:A, 1va2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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