Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKKSVLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHIPNSVRIIVQMAIIASLVIVV
DQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPIPSFIDGIGNGLGYGFVLMTVGFFRELLGSGKLFGLEVL
PLISNGGWYQPNGLMLLAPSAFFLIGFMIWAIRTFKPEQVEAKE

The query sequence (length=204) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xk7:D 206 204 1.0000 0.9903 1.0000 2.26e-147 8a1t:D, 8a1u:D, 8a1v:D, 8a1w:D, 8a1x:D, 8a1y:D, 8acw:D, 8acy:D, 8ad0:D, 8evu:D, 8ew3:D, 7xk3:D, 7xk4:D, 7xk5:D, 7xk6:D
2 7zc6:E 194 188 0.3725 0.3918 0.4043 3.91e-42
3 8ahx:E 213 196 0.3480 0.3333 0.3622 1.83e-36 8rb8:E, 8rb9:E, 8rbm:E, 8rbq:E
4 7zc6:A 191 148 0.2500 0.2670 0.3446 1.13e-13
5 8ahx:A 189 151 0.1814 0.1958 0.2450 1.39e-08 8rb8:A, 8rb9:A, 8rbm:A, 8rbq:A
6 8evu:E 198 140 0.1814 0.1869 0.2643 4.81e-07 8a1t:E, 8a1u:E, 8a1v:E, 8a1w:E, 8a1x:E, 8a1y:E, 8acw:E, 8acy:E, 8ad0:E, 8ew3:E, 7xk3:E, 7xk4:E, 7xk5:E, 7xk6:E, 7xk7:E
7 1j32:A 388 39 0.0735 0.0387 0.3846 0.007 1j32:B
8 5bnt:C 371 80 0.1078 0.0593 0.2750 1.1 5bnt:B, 5bnt:A, 5bnt:D
9 7myj:C 465 34 0.0686 0.0301 0.4118 6.1 3aqv:A, 6b1u:C, 6b2e:A, 8bik:A, 8bik:D, 5iso:A, 4zhx:C
10 4v8k:AM 319 42 0.0735 0.0470 0.3571 6.1 5b5m:M, 5b5m:y, 5b5n:M, 5b5n:y, 7c52:M, 1eys:M, 4v8k:BM, 7vrj:M, 8wdu:M, 8wdv:M, 3wmm:M, 5y5s:M
11 7dr0:F 161 59 0.0784 0.0994 0.2712 6.4 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
12 1gd9:A 388 53 0.0588 0.0309 0.2264 7.2 1dju:A, 1dju:B, 1gd9:B, 1gde:A, 1gde:B
13 6qdj:A 758 40 0.0686 0.0185 0.3500 9.4
14 5xy3:k 68 30 0.0490 0.1471 0.3333 9.9

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218