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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIRCDGVNIPELLDSILYLMPLDSYVDSSIQFMNVVSGDD
IPKIWGTYRQMIEGHGTDLKTITYLRREDFYERSKKAYAIVATGETSLYANIILKKGVV

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a34:I 142 139 1.0000 0.9789 1.0000 7.44e-102 4a34:A, 4a34:B, 4a34:C, 4a34:D, 4a34:E, 4a34:F, 4a34:G, 4a34:H, 4a34:J, 4a34:K, 4a34:O, 4a34:L, 4a34:M, 4a34:N, 4a34:P, 4a34:Q, 4a34:R, 4a34:S, 4a34:T
2 2wcu:A 149 147 0.5396 0.5034 0.5102 8.96e-44 2wcu:B
3 2wcv:B 140 139 0.4532 0.4500 0.4532 3.44e-33 2wcv:A, 2wcv:C, 2wcv:D, 2wcv:E, 2wcv:F, 2wcv:G, 2wcv:H, 2wcv:I, 2wcv:J
4 1ogd:A 131 128 0.2662 0.2824 0.2891 2.56e-08 1ogd:B, 1ogd:C, 1ogd:D, 1ogd:E, 1oge:A, 1oge:B, 1oge:C, 1oge:D, 1oge:E
5 1fg3:A 354 38 0.1151 0.0452 0.4211 1.4 1fg7:A, 1gew:A, 1gex:A, 1gey:A, 1iji:A
6 3p13:A 130 130 0.2014 0.2154 0.2154 3.2 3p13:B, 3p13:C, 3p13:D
7 2xwp:A 257 53 0.1151 0.0623 0.3019 3.8
8 7szp:A 353 38 0.1079 0.0425 0.3947 5.0 7szp:B, 7szp:C, 7szp:D
9 3c66:A 529 31 0.0791 0.0208 0.3548 5.8 3c66:B, 1fa0:A, 1fa0:B, 2q66:A
10 6yw5:ZZ 312 63 0.1151 0.0513 0.2540 6.1 6ywe:ZZ, 6ywx:ZZ, 6ywy:ZZ
11 8jc1:A 267 81 0.1511 0.0787 0.2593 6.5 8jc1:B, 8jc1:C, 8jc1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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