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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LKHENWPPPGPPAVRTFVSHFGGRAVSGHLTRAAAPLRTFSVLEPGGPGGCSQKRRATVEETAQAAACRIAQNGGFFRMN
TGECLGNVVSDGRRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINESQATESDET
QETGSFSKFVNVMSARTAIGHDRDGQLVLFHADGQTEQRGINLWEMAEFLLRQGVVNAINLDGGGSATFVLNGTLASYPS
DHCQDNMWRCPRRVSTVVCVHEP

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pku:B 264 264 1.0000 0.9962 0.9962 0.0 6pku:A, 6pku:C, 6pku:D
2 6pkg:A 307 239 0.6084 0.5212 0.6695 7.42e-125 6pkg:B, 6pki:A, 6pki:B, 6pki:C, 6pki:D
3 7o4k:A 167 165 0.1673 0.2635 0.2667 2.2
4 4b4o:A 295 63 0.0646 0.0576 0.2698 3.5 4b4o:B, 4b4o:C, 4b4o:D, 4b4o:E, 4b4o:F, 4b4o:G, 4b4o:H
5 8tvs:A 1316 105 0.1179 0.0236 0.2952 4.0
6 8tug:A 1367 105 0.1179 0.0227 0.2952 4.3 8tvp:A, 8tvq:A, 8tvv:A, 8tvw:A, 8tvx:A
7 7yff:B 740 143 0.1331 0.0473 0.2448 5.7 7yff:D
8 9ja1:A 1286 96 0.1141 0.0233 0.3125 5.9
9 3srj:A 298 26 0.0456 0.0403 0.4615 8.1 3sri:A, 3srj:B, 4z09:A, 4z0d:A, 4z0e:A, 4z0f:A
10 1zru:C 254 23 0.0418 0.0433 0.4783 9.3 1zru:A, 1zru:B
11 4hs9:A 287 79 0.0760 0.0697 0.2532 9.6 4gw3:A, 4gxn:A, 6jd9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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