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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKELIASNPDDLTTELKRAFRPLTPHIAIDGNELDALTILVNLTDKAKCKQKLRDEKWWASCINCVNYRQSHNPKFPDIR
SEGVIRTQALGELPSFLLSSSKIPPYHWSYSHDSKYVNKSAFLTNEFCWDGEISCLGELLKDADHPLWNTLKKLGCSQKT
CKAMAKQLADITLTTINVTLAPNYLTQISLPDSDTSYISLSPVASLSMQSHFHQRLQDENRHSAITRFSRTTNMGVTAMT
CGGAFRMLKSGAKFSSPPHHRLNNGSFLVLPNIRVCGATALSSPVTVGIPSLTAFFGFVHAFERNINRTTSSFRVESFAI
CVHQLHVEKRGLTAEFVEKGDGTISAPATRDDWQCDVVFSLILNTNFAQHIDQDTLVTSLPKRLARGSAKIAIDDFKHIN
SFSTLETAIESLPIEAGRWLSLYAQSNNNLSDLLAAMTEDHQLMASCVGYHLLEEPKDKPNSLRGYKHAIAECIIGLINS
ITFSSETDPNTIFWSLKNYQNYLVVQPRSI

The query sequence (length=510) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pif:G 521 520 1.0000 0.9789 0.9808 0.0 6lnb:H, 6lnc:H, 6pig:G, 6pij:G
2 6uvn:B 498 520 0.9510 0.9739 0.9327 0.0 8fuk:G
3 6v9q:A 454 498 0.8902 1.0000 0.9116 0.0 6vbw:A
4 7u5e:A 501 496 0.2373 0.2415 0.2440 8.99e-28
5 7u5d:A 630 233 0.1235 0.1000 0.2704 1.67e-11
6 7u5d:A 630 250 0.1118 0.0905 0.2280 1.30e-10
7 7jzw:B 306 63 0.0431 0.0719 0.3492 7.51e-06 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
8 8yeo:A 255 211 0.0961 0.1922 0.2322 3.02e-05 8w1p:H, 8ydb:A, 8yh9:A
9 8k0k:B 248 32 0.0275 0.0565 0.4375 0.25 8k22:C, 8k23:C, 8k23:c, 8k24:c, 8k24:C, 8k27:B, 8k28:B, 8k29:B, 7wwv:B
10 6v6s:k 370 110 0.0588 0.0811 0.2727 0.97 6v5v:g, 6v6s:a, 6v6s:b, 6v6s:c, 6v6s:d, 6v6s:e, 6v6s:f, 6v6s:g, 6v6s:h, 6v6s:i, 6v6s:j, 6v6s:l, 6v6s:m, 6v6s:t
11 4d5y:N 204 102 0.0608 0.1520 0.3039 1.3 7a01:12, 8a3d:l, 5aj0:AN, 8b5l:N, 8b6c:N, 9bdl:AL15, 9bdn:AL15, 9bdp:AL15, 7bhp:LN, 8bhf:A1, 8bpo:M2, 8btk:BN, 7cpu:LN, 7cpv:LN, 4d67:N, 6d90:N, 6d9j:N, 9f1b:BN, 9f1c:BN, 9f1d:BN, 7f5s:LN, 8fl2:L9, 8fl3:L9, 8fl4:L9, 8fl6:L9, 8fl7:L9, 8fl9:L9, 8fla:L9, 8flb:L9, 8flc:L9, 8fld:L9, 8fle:L9, 8flf:L9, 6frk:N, 6ftg:N, 6fti:N, 6ftj:N, 8g5y:LN, 8g5z:LN, 8g60:LN, 8g61:LN, 8g6j:LN, 8glp:LN, 6gz3:AN, 6gz4:AN, 6gz5:AN, 6hcf:N3, 6hcj:N3, 6hcm:N3, 6hcq:N3, 8idt:U, 8idy:U, 8ie3:U, 8ifd:2H, 8ife:2H, 8ine:U, 8inf:U, 8ink:U, 6ip5:2H, 6ip6:2H, 6ip8:2H, 8ipd:U, 8ipx:U, 8ipy:U, 8ir3:U, 3j7o:N, 3j7p:N, 3j7q:N, 3j7r:N, 3j92:N, 3jag:N, 3jah:N, 3jai:N, 3jaj:N, 3jan:N, 8jdj:S, 8jdk:S, 8jdl:S, 8jdm:S, 8k2c:LN, 5lks:LN, 6lqm:U, 6lsr:U, 6lss:U, 7ls1:H1, 7ls2:H1, 6lu8:U, 5lzs:N, 5lzt:N, 5lzu:N, 5lzv:N, 5lzw:N, 5lzx:N, 5lzy:N, 5lzz:N, 7mdz:N, 6mtb:N, 6mtc:N, 6mtd:N, 6mte:N, 7nfx:N, 7nwg:N3, 7nwh:N, 7nwi:N, 7o7y:BN, 7o7z:BN, 7o80:BN, 7o81:BN, 7obr:N, 8ohd:LN, 8oj0:LN, 8oj5:LN, 8oj8:LN, 6ole:O, 6olf:O, 6olg:AN, 6oli:O, 6olz:AN, 6om0:O, 6om7:O, 7ow7:t, 7oya:N1, 7oyb:N1, 7oyc:N1, 7oyd:N, 8p2k:BN, 6p5i:AN, 6p5j:AN, 6p5k:AN, 6p5n:AN, 8q7z:BN, 8q87:BN, 8qfd:N, 7qgg:O, 8qoi:LN, 7qvp:MN, 7qvp:LN, 7qwq:N, 7qwr:N, 7qws:N, 6qzp:LN, 6r5q:N, 6r6g:N, 6r6p:N, 6r7q:N, 8rjb:N, 8rjc:N, 8rjd:N, 8scb:N, 6sgc:N2, 6swa:M, 5t2c:t, 6t59:N3, 7tm3:N, 7toq:AL15, 7tor:AL15, 7tut:N, 7ucj:N, 7uck:N, 4ug0:LN, 4ujc:BN, 4ujd:AN, 4uje:CN, 4v5z:Bm, 4v6x:CN, 6w6l:O, 6xa1:LN, 7xnx:LN, 7xny:LN, 8xsx:LN, 8xsy:LN, 8xsz:LN, 6y0g:LN, 8y0w:LN, 8y0x:LN, 6y2l:LN, 6y57:LN, 6y6x:LN, 8yoo:LN, 8yop:LN, 6z6l:LN, 6z6m:LN, 6z6n:LN, 7zjw:LQ, 7zjx:LQ, 6zm7:LN, 6zme:LN, 6zmi:LN, 6zmo:LN, 6zvk:12
12 4d3f:B 289 58 0.0392 0.0692 0.3448 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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