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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKAIQAMLKIIQDEVNSKLEMLVSLDQLVKTEIKPKVSLINTAVSVSIPAQISNLQTKVLQKLVYLEESITKQCTDTTDD
DKVDTTIKPVEYYKPDGCNKTNDHFTMQPGVNFYTVPNLGPSSSSADECYTNPSFSIGSSIYMFSQEIRKTDCTTGEILS
IQIVLGRIVDKGQQGPQASPLLVWSVPNPKIINSCAVAAGDETGWVLCSVTLTAASGEPIPHMFDGFWLYKFEPDTEVVA
YRITGFAYLLDKVYDSVFIGKGGGIQRGNDLYFQMFGLSRNRQSIKALCEHGSCLGGYQVLCDRAVMSFGSEESLISNAY
LKVNDVASGKPTIISQTFPPSDSYKGSNGRIYTIGERYGIYLAPSSWNRYLRFGLTPDISVRSTTWLKEKDPIMKVLTTC
TNTDKDMCPEICNTRGYQDIFPLSEDSSFYTYIGITPSNEGTKSFVAVKDDAGHVASITILPNYYSITSATISCFMYKEE
IWCIAVTEGRKQKENPQRIYAHSYRVQKMCFNI

The query sequence (length=513) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tvi:A 513 513 1.0000 1.0000 1.0000 0.0 8tvi:B, 8tvi:C, 8tvi:D
2 7ty0:D 485 482 0.2105 0.2227 0.2241 6.21e-23 8ja5:A, 7txz:B, 2vwd:A, 2vwd:B, 8xc4:B
3 6pdl:E 421 383 0.1676 0.2043 0.2245 3.93e-14 6pdl:C, 7syy:A
4 4mza:B 437 413 0.1696 0.1991 0.2107 4.14e-14 6c0m:A, 6c0m:B, 5kv8:A, 5kv8:B, 5kv9:B, 4mza:A, 4mze:A, 4mze:B, 1v2i:A, 1v2i:B, 1v3b:A, 1v3b:B, 1v3c:A, 1v3c:B, 1v3d:A, 1v3d:B, 1v3e:A, 1v3e:B, 4wef:A, 4wef:B, 4xjq:A, 4xjq:B, 4xjr:A, 4xjr:B
5 6jjm:A 452 341 0.1423 0.1615 0.2141 2.82e-04 5b2d:A, 5b2d:B, 6jjm:B, 6jjn:A, 6jjn:B
6 6sg8:B 381 257 0.1033 0.1391 0.2062 0.036 6sg8:A
7 6jlu:W 51 27 0.0195 0.1961 0.3704 2.9 8j5k:W, 8j5k:w, 6jlu:w
8 6ueb:A 2099 63 0.0390 0.0095 0.3175 3.6
9 3e2v:A 363 38 0.0292 0.0413 0.3947 3.8 3e2v:B
10 5cxx:B 274 51 0.0312 0.0584 0.3137 6.8 5cxx:A, 5cxx:C
11 5bv5:D 327 91 0.0409 0.0642 0.2308 7.3 5bv5:A, 5bv5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218