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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLL
KTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGK
VSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKY

The query sequence (length=221) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1tqx:A 221 221 1.0000 1.0000 1.0000 3.65e-167 1tqx:B
2 4nu7:C 227 217 0.5068 0.4934 0.5161 9.75e-77 4nu7:A, 4nu7:B, 4nu7:D
3 1h1y:B 219 220 0.4977 0.5023 0.5000 8.84e-71 1h1z:A, 1h1z:B
4 3qc3:A 225 214 0.4706 0.4622 0.4860 2.29e-65 3ovp:A, 3ovp:B, 3ovq:A, 3ovq:B, 3ovr:A, 3ovr:B, 3qc3:B
5 2fli:C 219 220 0.3756 0.3790 0.3773 1.98e-46 2fli:A, 2fli:B, 2fli:D, 2fli:E, 2fli:F, 2fli:G, 2fli:H, 2fli:I, 2fli:J, 2fli:K, 2fli:L
6 5umf:C 224 226 0.3982 0.3929 0.3894 5.31e-44 5umf:A, 5umf:B
7 1rpx:A 230 220 0.3575 0.3435 0.3591 2.84e-40 1rpx:B, 1rpx:C
8 7sbj:A 221 222 0.3801 0.3801 0.3784 5.33e-40 7sbj:B, 7sbj:C
9 7u5y:A 227 222 0.3439 0.3348 0.3423 1.47e-38 7u5y:B, 7u5y:C, 7u5y:D, 7u5y:E, 7u5y:F
10 7b1w:F 234 218 0.3167 0.2991 0.3211 1.55e-38 7b1w:J, 7b1w:A, 7b1w:B, 7b1w:C, 7b1w:D, 7b1w:E, 7b1w:G, 7b1w:H, 7b1w:I, 7b1w:K, 7b1w:L
11 3ct7:A 219 207 0.3167 0.3196 0.3382 5.01e-30 3ct7:B, 3ct7:C, 3ct7:D, 3ct7:E, 3ct7:F, 3ctl:A, 3ctl:B, 3ctl:C, 3ctl:D, 3ctl:E, 3ctl:F
12 3usb:B 401 106 0.1131 0.0623 0.2358 4.6
13 3tsb:B 434 106 0.1131 0.0576 0.2358 4.9
14 3tsb:A 490 106 0.1131 0.0510 0.2358 5.2 3tsd:A, 3usb:A
15 3tsd:B 426 106 0.1131 0.0587 0.2358 5.9
16 4i8p:A 500 118 0.1131 0.0500 0.2119 8.4 4i8p:B
17 4myx:G 356 101 0.1086 0.0674 0.2376 9.2 6mgu:A, 6mgu:B, 7mtu:A, 7mtu:C, 7mtu:B, 7mtu:D, 7mtu:E, 7mtu:G, 7mtu:F, 7mtu:H, 7mtx:A, 7mtx:C, 7mtx:B, 7mtx:D, 7mtx:E, 7mtx:G, 7mtx:F, 7mtx:H, 4my1:A, 4my1:C, 4my1:B, 4my1:D, 4my1:E, 4my1:F, 4my1:G, 4my1:H, 4my8:A, 4my8:B, 4my8:C, 4my8:D, 4my9:A, 4my9:C, 4my9:B, 4my9:D, 4my9:E, 4my9:F, 4my9:H, 4my9:G, 4mya:A, 4mya:B, 4myx:A, 4myx:C, 4myx:B, 4myx:D, 4myx:E, 4myx:F, 4myx:H, 4qm1:A, 4qm1:B, 4qm1:D, 4qm1:C, 5urs:A, 5urs:C, 5urs:B, 5urs:D, 5urs:E, 5urs:G, 5urs:F, 5urs:H, 5uuv:A, 5uuv:D, 5uuv:B, 5uuv:C, 5uuz:A, 5uuz:C, 5uuz:B, 5uuz:D, 5uuz:E, 5uuz:G, 5uuz:F, 5uuz:H
18 3jb6:B 498 37 0.0588 0.0261 0.3514 9.6 3jb7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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