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BioLiP
>protein
LITDTLSPQAFEEALRAKGDFYHIHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRI
LDHDGSDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQHYPWIKEEGYFS
FRSSLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTVTDKAAWHTTRLVLE

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1otw:A 255 252 0.9832 0.9176 0.9286 2.66e-173 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
2 1rcw:B 214 85 0.0798 0.0888 0.2235 1.24e-04 1rcw:A, 1rcw:C
3 4lqx:B 309 118 0.1176 0.0906 0.2373 0.002 4lqx:A
4 6p07:B 303 111 0.1345 0.1056 0.2883 0.55 6nyv:B, 6nyw:B, 6p07:C, 6p07:D, 6p07:E, 6p07:F, 6p10:B, 6p11:B, 6p12:B, 6p13:B
5 6p07:A 270 84 0.1092 0.0963 0.3095 0.65
6 1rtw:B 209 44 0.0504 0.0574 0.2727 1.1 1rtw:A, 1rtw:C, 1rtw:D
7 7sc6:A 349 61 0.0756 0.0516 0.2951 1.6 7scq:A, 7scq:B
8 4yuu:b1 503 65 0.0714 0.0338 0.2615 2.2 4yuu:B1, 4yuu:B2, 4yuu:b2
9 2y53:A 529 54 0.0840 0.0378 0.3704 3.4 2vro:A, 2vro:B, 2y53:B, 2y5d:A, 2y5d:B
10 6o9l:Q 430 39 0.0630 0.0349 0.3846 5.7 8bvw:W, 8byq:W, 7eg9:U, 7ega:U, 7egb:U, 7egc:U, 7ena:EA, 7enc:EA, 5gpy:A, 8gxq:EA, 8gxs:EA, 5iy6:Q, 5iy8:Q, 5iy9:Q, 5iya:Q, 5iyb:Q, 5iyc:Q, 5iyd:Q, 7lbm:Q, 7nvr:W, 7nvs:W, 7nvt:W, 7nvu:W, 7nvy:W, 7nvz:W, 7nw0:W, 8s51:W, 8s52:W, 8s54:W, 8s55:W, 8s5n:W, 1vd4:A, 8wak:U, 8wal:U, 8wan:U, 8wao:U, 8wap:U, 8waq:U, 8war:U, 8was:U
11 3dgb:A 371 111 0.1176 0.0755 0.2523 6.5 3ct2:A, 3ct2:B, 3fj4:A, 3fj4:B
12 6wj9:B 308 76 0.0798 0.0617 0.2500 6.6 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
13 6isl:A 120 37 0.0504 0.1000 0.3243 7.6 6isl:B
14 1akh:B 78 27 0.0462 0.1410 0.4074 7.6 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
15 8a0c:A 1116 76 0.0924 0.0197 0.2895 7.6 8a0c:B, 8a0m:A, 8a0m:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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