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BioLiP
>protein
LIQSEEYVDLTFKLRGAPIPLDNGYLTYAALSRICPPLHELKSIGIHPIAGIPTRNNLLELTAQSRLKIRIYHQQIPLIY
PYLAGQAFHIGQNFYQLDIPDYKPLISSESVYSRLVIIKGFQDSTNFIEAVQRQMDNLGIQGKIELLTRQDGTPQRRQLT
INKEGKQFKVRGFGVKISELNPEDSLTLQEQGIGGKRKMMCGIFVPATRSKEEEET

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fcj:B 216 216 1.0000 1.0000 1.0000 4.40e-160 8fcu:B, 8fd2:B, 8fd3:B, 8ff4:B, 8ff5:B
2 3okf:A 360 70 0.1065 0.0639 0.3286 0.15 3okf:B
3 8sor:A 1156 121 0.1389 0.0260 0.2479 2.7
4 5ntd:G 520 66 0.0880 0.0365 0.2879 3.0 4efd:F, 5nsm:A, 5nsm:B, 5nsm:C, 5nsm:D, 5nsm:E, 5nsm:F, 5nsm:G, 5nsm:H, 5nsm:I, 5nsm:J, 5nsm:K, 5nsm:L, 5nsq:A, 5nsq:B, 5nsq:C, 5nsq:D, 5nsq:E, 5nsq:F, 5ntd:A, 5ntd:B, 5ntd:D, 5ntd:C, 5ntd:E, 5ntd:F, 5ntd:H, 5ntd:I, 5ntd:J, 5ntd:K, 5ntd:L
5 6yjo:A 475 71 0.1065 0.0484 0.3239 4.7
6 6plm:B 752 71 0.1019 0.0293 0.3099 5.2 6k4r:A, 6k4r:B, 7mir:A, 7mis:A, 6oqq:A, 6oqq:C, 6plm:A, 6s5t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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