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BioLiP
>protein
LIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQAL
NFAFKDKIKAMFGFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSKGARQFNGLIDVYKKTLKSDGVAG
LYRGFLPSVVGIVVYRGLYFGMYDSLKLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYDGAFDCLRKIVAAEG
VGSLFKGCGANILRGVAGAGVISMYDQLQ

The query sequence (length=269) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c9q:B 290 273 0.9071 0.8414 0.8938 1.60e-180 4c9g:A, 4c9h:A, 4c9h:B, 4c9j:A, 4c9j:B, 4c9q:A
2 4c9q:B 290 73 0.0892 0.0828 0.3288 2.55e-04 4c9g:A, 4c9h:A, 4c9h:B, 4c9j:A, 4c9j:B, 4c9q:A
3 6gci:A 292 287 0.7881 0.7260 0.7387 8.61e-150
4 2c3e:A 293 287 0.5762 0.5290 0.5401 6.27e-97 1okc:A
5 8hbw:A 290 269 0.2082 0.1931 0.2082 4.50e-12 8g8w:A, 8j1n:A
6 8hbw:A 290 184 0.1636 0.1517 0.2391 2.96e-10 8g8w:A, 8j1n:A
7 8hbw:A 290 170 0.1561 0.1448 0.2471 1.84e-07 8g8w:A, 8j1n:A
8 8hbw:A 290 74 0.0743 0.0690 0.2703 0.006 8g8w:A, 8j1n:A
9 8gym:m2 318 164 0.1487 0.1258 0.2439 0.001 8gym:M2
10 8gym:m2 318 145 0.1524 0.1289 0.2828 0.004 8gym:M2
11 8gym:m2 318 125 0.1375 0.1164 0.2960 0.009 8gym:M2
12 8gym:m2 318 81 0.0892 0.0755 0.2963 1.3 8gym:M2
13 4bcu:A 188 88 0.0855 0.1223 0.2614 1.3 3s4g:A, 4v4m:e, 4v4m:f, 4v4m:g, 4v4m:h, 4v4m:i, 4v4m:j, 4v4m:k, 4v4m:l, 4v4m:m, 4v4m:n, 4v4m:o, 4v4m:p, 4v4m:q, 4v4m:r, 4v4m:s, 4v4m:t, 4v4m:u, 4v4m:v, 4v4m:w, 4v4m:x, 4v4m:y, 4v4m:z, 4v4m:0, 4v4m:1, 4v4m:2, 4v4m:3, 4v4m:4, 4v4m:5, 4v4m:6, 4v4m:7, 4v4m:A, 4v4m:B, 4v4m:C, 4v4m:D, 4v4m:E, 4v4m:F, 4v4m:G, 4v4m:H, 4v4m:I, 4v4m:J, 4v4m:K, 4v4m:L, 4v4m:M, 4v4m:N, 4v4m:O, 4v4m:P, 4v4m:Q, 4v4m:R, 4v4m:S, 4v4m:T, 4v4m:U, 4v4m:V, 4v4m:W, 4v4m:X, 4v4m:Y, 4v4m:Z, 4v4m:a, 4v4m:b, 4v4m:c, 4v4m:d
14 6bpm:C 711 53 0.0632 0.0239 0.3208 2.4 6bpm:A
15 6r1n:A 420 55 0.0520 0.0333 0.2545 3.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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