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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LHLIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHK
IRMALKVLLDEKNHPVLIHSKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFMEIFDVSSFS

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mok:A 166 154 0.9935 0.9217 0.9935 5.38e-113 7moe:A, 7moe:B, 7mof:A, 7mof:B, 7mog:A, 7mog:B, 7moh:A, 7moh:B, 7moi:A, 7moi:B, 7moj:A, 7moj:B, 7mok:B, 7mom:A, 7mom:B
2 4r0s:A 162 128 0.1818 0.1728 0.2188 2.17e-06 4r0s:B, 4r0t:B
3 1qvr:A 803 75 0.1558 0.0299 0.3200 0.027 4fcv:A, 4fcv:B, 4fcv:C, 4fcw:A, 4fcw:C, 4fcw:F, 4fd2:A, 4fd2:B, 4fd2:D, 4lj5:A, 4lj6:A, 4lj7:A, 4lj7:B, 4lj7:C, 4lj8:A, 4lj9:A, 4lja:A, 1qvr:B, 1qvr:C
4 6qw6:64 73 74 0.1364 0.2877 0.2838 0.087 6qx9:64
5 4hse:A 369 67 0.1429 0.0596 0.3284 0.15
6 6w6j:D 707 74 0.1494 0.0325 0.3108 0.64 6dju:D, 6dju:E, 6djv:D, 6djv:E, 6djv:F, 7l6n:D, 7l6n:E, 7l6n:F, 6w6e:D, 6w6e:E, 6w6e:F, 6w6g:D, 6w6g:E, 6w6h:D, 6w6h:E, 6w6i:D, 6w6i:E, 6w6j:E
7 8tk2:A 181 87 0.1623 0.1381 0.2874 0.64 3f81:A, 3f81:B, 1j4x:A, 8tk2:B, 8tk3:A
8 3v0h:B 327 36 0.1039 0.0489 0.4444 0.85 3v0h:A
9 4erc:A 150 115 0.2143 0.2200 0.2870 2.4 4erc:B
10 3hee:A 148 47 0.0974 0.1014 0.3191 3.2 3hee:B, 3ph3:A, 3ph3:B, 3ph4:A, 3ph4:B
11 6g84:B 368 64 0.1039 0.0435 0.2500 7.2 6g84:A, 6g85:A, 6g85:B, 6g86:A, 6g86:B, 5xw5:A
12 1ygu:B 582 49 0.1039 0.0275 0.3265 8.1 1ygr:A, 1ygr:B, 1ygu:A
13 6h8s:A 291 53 0.0909 0.0481 0.2642 8.6 2cjz:A, 6h8r:A, 5ovr:A, 5ovx:A, 5ow1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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