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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDS
IRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRETF
PEATIIKPAEIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDPDARGKTFAFVGPSRYLLFD
LVQYVFAVAHRPFLPYPLPHFAYRWIGRLFEISPFEPWTTRDKVERIHTTDKILPHLPGLEDLGVEATPLELKAIEVLRR
HRTYRWLSSEIEDVQPAKTIP

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q0a:P 342 341 1.0000 0.9971 1.0000 0.0 7dgq:R, 7dgr:R, 7dgs:R, 7dgz:R, 7dh0:R, 7dkf:R2, 8q0f:P, 8q0j:P, 8q0m:P, 8q0o:P, 8q0q:P, 8q1p:P, 8q1u:P, 8q1y:P, 8q25:P, 8q45:P, 8q46:P, 8q47:P, 8q48:P, 8q49:P, 8q4a:P, 7qsd:P, 7qsk:P, 7qsl:P, 7qsm:P, 7qsn:P, 7qso:P, 7r41:P, 7r42:P, 7r43:P, 7r44:P, 7zdh:d, 7zdm:d, 7zeb:d, 6zkc:d, 6zkg:d, 6zkk:d, 6zko:d
2 8ud1:1P 342 340 0.8886 0.8860 0.8912 0.0 5gpn:p, 5gup:L, 8ueo:1P, 8uep:1P, 8ueq:1P, 8uer:1P, 8ues:1P, 8uet:1P, 8ueu:1P, 8uev:1P, 8uew:1P, 8uex:1P, 8uey:1P, 8uez:1P, 8ugh:1P, 8ugi:1P, 8ugj:1P, 8ugn:1P, 8ugn:5P, 8ugr:1P, 8ugr:5P, 7v2c:J, 7v2e:J, 7v2h:J, 7v2k:J, 7v2r:J, 7v31:J, 7v33:J, 7vb7:J, 7vbn:J, 7vbz:J, 7vxp:J, 7vy8:J, 7vyf:J, 7vyn:J, 7vzv:J, 7vzw:J, 7w0r:J, 7w0y:J, 7w1t:J, 7w1u:J, 7w1v:J, 7w1z:J, 7w20:J, 7w2r:J, 7w2u:J, 7w2y:J, 7w31:J, 7w32:J, 7w35:J, 7w4c:J, 7w4d:J, 7w4e:J, 7w4f:J, 7w4g:J
3 5lnk:d 314 338 0.8915 0.9682 0.8994 0.0 6q9d:A9, 6qa9:A9, 6qbx:A9, 6qc2:A9, 6qc3:A9, 6qc4:A9, 6qc5:A9, 6qc6:A9, 6qc7:A9, 6qc8:A9, 6qc9:A9, 6qca:A9, 6qcf:A9, 7r45:P, 7r46:P, 7r47:P, 7r48:P, 7r4c:P, 7r4d:P, 7r4f:P, 7r4g:P, 7zd6:d, 7zdj:d, 7zdp:d, 6zk9:d, 6zkd:d, 6zke:d, 6zkf:d, 6zkh:d, 6zki:d, 6zkj:d, 6zkl:d, 6zkm:d, 6zkn:d, 6zkp:d, 6zkq:d, 6zkr:d, 6zks:d, 6zkt:d, 6zku:d, 6zkv:d
4 5xtb:J 337 336 0.7947 0.8042 0.8065 0.0 5xtd:J, 5xth:J, 5xti:J, 5xti:BJ
5 7b93:P 342 340 0.7771 0.7749 0.7794 0.0 8c2s:P, 8ca3:P, 8ca5:P, 6g2j:P, 8iao:P, 8iap:P, 8ib4:P, 8ib5:P, 8ib9:P, 8iba:P, 8ibd:P, 8ibe:P, 8ic2:P, 8ic3:P, 8olt:P, 8om1:P, 7psa:P, 8pw5:P1, 8pw6:P1, 8pw7:P1, 8rgp:P, 8rgr:P, 6zr2:P, 6ztq:P
6 7v2d:J 297 340 0.7713 0.8855 0.7735 0.0 7v2f:J, 7v30:J, 7v32:J, 7v3m:J, 7vwj:J, 7vxu:J, 7vya:J, 7vyh:J, 7vz1:J, 7w00:J, 7w0h:J, 7w1o:J, 7w1p:J, 7w2k:J, 7w2l:J, 7w4j:J, 7w4k:J, 7w4l:J, 7w4m:J, 7w4n:J, 7w4q:J
7 8rgq:P 314 340 0.7185 0.7803 0.7206 8.34e-174 7ak5:P, 6g72:P, 8rgt:P
8 7ak6:P 288 340 0.6598 0.7812 0.6618 7.73e-151
9 8b9z:P 377 358 0.4809 0.4350 0.4581 1.04e-95 8ba0:P, 8esw:A9, 8esz:A9
10 8e73:A9 330 325 0.3783 0.3909 0.3969 1.31e-68 6x89:A9
11 7aqr:P 332 241 0.3431 0.3524 0.4855 9.40e-63 7a23:T, 7a24:T, 7ar7:P, 7ar8:P, 7arb:P, 8bee:P, 8bpx:P, 8bq5:P, 8bq6:P
12 7arc:P 347 234 0.2845 0.2795 0.4145 3.33e-60 7ard:P
13 7b0n:P 355 336 0.3402 0.3268 0.3452 2.22e-57 6gcs:E, 7o6y:E, 7o71:E, 6rfr:E, 6rfs:E, 6y79:E, 6yj4:P
14 7zm7:E 353 305 0.3226 0.3116 0.3607 1.84e-55 7zmb:E, 7zmg:E
15 6rfq:E 263 263 0.2639 0.3422 0.3422 1.28e-48
16 8iuf:A9 484 253 0.2522 0.1777 0.3399 1.09e-42 8j9h:A9, 8j9i:A9, 8j9j:A9
17 8gym:a9 340 260 0.2610 0.2618 0.3423 2.46e-37 8b6f:A1, 8bqs:A1, 8gym:A9, 8gzu:a9, 8gzu:A9, 7tgh:A9
18 6jkh:A 212 164 0.1144 0.1840 0.2378 0.41 6jkh:B
19 3rkr:A 221 37 0.0440 0.0679 0.4054 0.85 3rkr:B
20 8b6g:CE 321 105 0.0645 0.0685 0.2095 1.3 8bqs:CE, 8gym:2e, 8gym:2E
21 5jla:D 259 56 0.0557 0.0734 0.3393 3.5 5jla:A, 5jla:B, 5jla:C
22 1g0o:C 281 36 0.0469 0.0569 0.4444 3.9 1doh:A, 1doh:B, 1g0n:A, 1g0n:B, 1g0o:A, 1g0o:B, 1g0o:D, 1ybv:A, 1ybv:B
23 7lgb:A 282 42 0.0469 0.0567 0.3810 4.4
24 4fj0:D 261 40 0.0440 0.0575 0.3750 4.6 4fiz:A, 4fj0:A, 4fj0:B, 4fj0:C, 4fj1:A, 4fj1:B, 4fj1:C, 4fj1:D, 4fj2:A, 4fj2:B, 4fj2:C, 4fj2:D, 3qwf:A, 3qwf:B, 3qwf:C, 3qwf:D, 3qwf:E, 3qwf:F, 3qwf:G, 3qwf:H, 3qwh:A, 3qwh:B, 3qwh:C, 3qwh:D, 3qwi:A, 3qwi:B, 3qwi:C, 3qwi:D
25 5o6u:B 182 53 0.0499 0.0934 0.3208 6.1
26 4k26:A 265 30 0.0352 0.0453 0.4000 6.9 3gmd:A, 3gmd:B, 3gmd:C, 3gmd:D, 3gmd:E, 3gmd:F, 3gmd:G, 3gmd:H, 4k26:B, 4nmh:A, 4nmh:B, 4nmh:C, 4nmh:D, 5pgz:A, 5pgz:B, 5qij:A, 5qij:B, 1y5m:A, 1y5m:B, 1y5r:A, 1y5r:B
27 3dwf:B 275 28 0.0352 0.0436 0.4286 7.0 3dwf:A, 3dwf:C, 3dwf:D, 3g49:A, 3g49:B, 3g49:C, 3g49:D, 3lz6:A, 3lz6:B, 3lz6:C, 3lz6:D, 1xse:A, 1xse:B
28 3m2p:B 255 33 0.0411 0.0549 0.4242 7.0
29 1u63:A 214 85 0.0587 0.0935 0.2353 8.6 1i2a:A, 1u63:C
30 2pk3:A 309 30 0.0323 0.0356 0.3667 9.8 2pk3:B
31 8e0q:A 1689 168 0.1056 0.0213 0.2143 9.8 8d4x:A, 8e0q:B
32 8k22:A 929 27 0.0323 0.0118 0.4074 9.9 8k21:a, 8k22:a, 8k23:A, 8k23:a, 8k24:a, 8k24:A, 8k25:A, 8k25:a

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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