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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LHAFVRSPHYRTIPSAGPNGIVVNRDMLVHQFRDFYKTLQHCSLVDKVHLMSERPSVEALRVADQMVSIGATFLEMPLTG
MEHRATEFMESMRYVRGAGGPSTLASYLQDTENCRCNSGDVVCLPNGIAVGHGPRTNAVAHTTLKQLFEVKDDQFSFDVF
TLEQEGDAPPLGDYFGFAGSNVLLTWKDEHGLLAVDQYQQKQPHTEMNVVYLEPGCHFLSFYGVDHTIDVLVQKGYERSM
DSIAAAGLNPIPVQWSEMDKLGISMRAAVLPLKFFKANVGGMLSRNKSRGARWQTHQ

The query sequence (length=297) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fnc:5 297 297 1.0000 1.0000 1.0000 0.0 8fn6:5, 8fnf:5, 8fni:5, 8fnk:5
2 2vwt:A 256 114 0.0842 0.0977 0.2193 0.30 2vwt:B, 2vwt:C
3 4bs9:A 691 55 0.0640 0.0275 0.3455 0.90
4 6ct6:B 331 54 0.0640 0.0574 0.3519 1.5 6ct6:A
5 7et9:A 254 75 0.0606 0.0709 0.2400 2.7 7et9:B, 7et9:C, 7eta:A, 7eta:B, 7eta:C, 7etb:A, 7etb:B, 7etb:C, 7etc:A, 7etc:C, 7etc:B, 7etd:A, 7etd:B, 7etd:C, 7ete:A, 7ete:C, 7ete:B, 7etf:A, 7etf:B, 7etf:C, 7etg:A, 7etg:B, 7etg:C, 7eth:A, 7eth:B, 7eth:C, 7eti:A, 7eti:B, 7eti:C
6 3i76:B 229 61 0.0640 0.0830 0.3115 3.1 3i76:A, 3i76:C
7 6xfk:A 63 39 0.0505 0.2381 0.3846 6.3
8 6ixx:A 463 43 0.0404 0.0259 0.2791 6.4 1g9k:A, 1h71:P, 1o0q:A, 1o0t:A, 1om6:A, 1om7:A, 1om8:A, 1omj:A, 3u1r:A
9 1n1e:A 349 72 0.0741 0.0630 0.3056 8.1 1evz:A, 1jdj:A, 1m66:A, 1m67:A, 1n1e:B, 1n1g:A
10 6ly5:a 742 69 0.0707 0.0283 0.3043 8.7 6l4u:A
11 7sza:A 233 75 0.0741 0.0944 0.2933 8.9 7sza:C, 7szb:A, 7szb:C, 7szc:A, 7szc:C, 7szd:A, 7szd:C, 6wqx:C, 6wqx:D
12 7tbw:A 1928 144 0.1347 0.0207 0.2778 9.7
13 7e7l:A 770 86 0.0741 0.0286 0.2558 9.9 7e7l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218