Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LGYTPINPDTSPMLMYSQCHWHYNLPQGMERPSSVNRSLPAPYQPHHSSVNKYRGVWISTEMHPAFLVGLAPQLKKLPHG
RVVPQTPVAEVIDEFNKLSPLIDDAAARDGWLAKIFQHCAFQRSGAEAMALWDKHCAPRFMRDDSASAPPLPLVQAILFC
CSKSDSAEWRPIFTKCLKDGWNYTPSFDTPQWSYLLKSLGRQGDEEGVRLVLEEMADVQADLDRVEARSLVYALNAVHDK
AIYNYVKKYLFYLGERKVKFLRITYADLRGHGAEKLRVPLKENDSMFYHVCWHASIRQPRQFSPRQLYFDYAPSQL

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ane:aj 316 316 1.0000 1.0000 1.0000 0.0
2 7aor:aj 315 316 0.7089 0.7111 0.7089 1.15e-172
3 7pub:DJ 357 316 0.6867 0.6078 0.6867 5.58e-172 6hiv:DJ, 6hiw:DJ, 6hiz:DJ, 7pua:DJ, 6sg9:DJ, 6sgb:DJ
4 6y1x:A 252 42 0.0506 0.0635 0.3810 1.9 6y1x:B
5 6sga:F7 662 47 0.0506 0.0242 0.3404 4.2 7pua:F7, 7pub:F7, 6sgb:F7
6 8q9v:A 543 106 0.0886 0.0516 0.2642 6.2 8q9u:A
7 7qh8:A 471 116 0.0854 0.0573 0.2328 8.2 7qhn:A, 7qi8:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218