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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYPVLKSFTV
ITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVWLLSFKGK

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rdm:A 165 160 1.0000 0.9697 1.0000 2.91e-119 4rd5:A, 4rd5:B, 4rdm:B
2 4z5q:A 363 80 0.1313 0.0579 0.2625 1.1
3 5nem:2 214 71 0.1250 0.0935 0.2817 1.2
4 7aoi:XA 154 92 0.1313 0.1364 0.2283 5.1 6yxx:EG, 6yxy:EG
5 7cm9:A 693 37 0.0938 0.0216 0.4054 5.1 7cm9:B, 7cm9:C, 7cm9:D
6 4x4o:C 443 48 0.1062 0.0384 0.3542 7.7 2dr5:A, 2dr7:A, 2dr8:A, 2dr9:A, 2dra:A, 2drb:A, 2dvi:A, 3ouy:A, 3ouy:B, 3ov7:A, 3ov7:B, 3ova:A, 3ovb:A, 3ovb:B, 3ovs:A, 3ovs:B, 1r89:A, 1r8a:A, 1r8b:A, 1r8c:A, 1sz1:A, 1sz1:B, 1tfw:B, 1tfw:D, 1tfw:A, 1tfw:C, 1tfy:B, 1tfy:D, 1tfy:A, 1tfy:C, 1uet:A, 1ueu:A, 1uev:A, 4x4n:E, 4x4n:F, 4x4n:A, 4x4n:C, 4x4o:A, 4x4p:A, 4x4p:C, 4x4p:E, 4x4p:G, 4x4q:A, 4x4q:C, 4x4r:A, 4x4r:C, 4x4s:A, 4x4s:C, 4x4t:A, 4x4t:C, 4x4t:E, 4x4t:F, 4x4u:A, 4x4u:C, 4x4u:E, 4x4u:F, 4x4v:A, 4x4v:C, 2zh1:A, 2zh2:A, 2zh3:A, 2zh4:A, 2zh5:A, 2zh6:A, 2zh7:A, 2zh8:A, 2zh9:A, 2zha:A, 2zhb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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