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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LGTELDYDTFCFYYDWYGSEAIDGQYRHWAHAIAPDPNGGSGQNPGTIPGTQESIASNFYPQLGRYSSSDPNILTKHMDM
FVMARTGVLALTWWNEQDETEAKRIGLILDAADKKKIKVCFHLEPYPSRNVQNLRENIVKLITRYGNHPAFYRKDGKPLF
FIYDSYLIEPSEWEKLLSPGGSITIRNTAYDALMIGLWTSSPTVQRPFILNAHFDGFYTYFAATGFTYGSTPTNWVSMQK
WAKENGKIFIPSVGPGYIDTRIRPWNGSVIRTRTDGQYYDAMYRKAIEAGVSAISITSFNEWHEGSQIEPAVPYTSSEFT
YLDYENREPDYYLTRTAYWVGKFRESK

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zj6:AAA 360 347 1.0000 0.9639 1.0000 0.0 4ad2:A, 4ad2:B, 4ad2:C, 4ad2:D, 4ad3:A, 4ad3:B, 4ad3:C, 4ad3:D, 4ad4:A, 4ad5:A, 6fam:A, 6far:A, 6fwg:A, 6fwi:A, 6fwj:A, 6fwl:A, 6fwm:A, 6fwo:A, 6fwp:A, 6fwq:A, 6hmg:A, 6hmh:A, 5lyr:A, 5m03:A, 5m17:A, 5m3w:A, 5m5d:A, 5mc8:A, 5mel:A, 4utf:A, 4v27:A, 4v28:A
2 6zdk:AAA 362 348 0.4524 0.4337 0.4511 2.91e-100 6zdl:AAA, 6zfa:AAA, 6zfn:AAA, 6zj1:AAA, 6zj5:AAA
3 1ewq:A 759 122 0.0922 0.0422 0.2623 0.23 1ewq:B, 1fw6:A, 1fw6:B, 1nne:A, 1nne:B
4 4oau:C 692 32 0.0375 0.0188 0.4062 1.4 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
5 1r66:A 322 65 0.0548 0.0590 0.2923 1.6 1r6d:A
6 3zsc:A 329 64 0.0548 0.0578 0.2969 1.7
7 7op8:A 1118 94 0.0634 0.0197 0.2340 2.0 7op1:A, 7op3:A, 7op5:A
8 6akz:A 451 29 0.0346 0.0266 0.4138 6.2
9 4liq:E 469 148 0.1009 0.0746 0.2365 6.4
10 3dje:B 437 91 0.0692 0.0549 0.2637 8.1 3djd:A, 3djd:B, 3dje:A
11 4n58:A 266 66 0.0548 0.0714 0.2879 8.2 4n58:B, 4n59:A, 4n59:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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