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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LGSMSRRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDLDEIDGAAELDRTEEYALGVVGVLES
YIGSINNITKQSACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIK
NTLDIHKSITIN

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4c3b:C 178 177 0.9884 0.9551 0.9605 1.68e-123 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 169 0.9128 1.0000 0.9290 1.93e-112 6pzq:C
3 4cs7:C 172 164 0.3663 0.3663 0.3841 1.52e-38 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 2cqe:A 98 22 0.0640 0.1122 0.5000 1.1
5 2cqe:A 98 26 0.0581 0.1020 0.3846 9.1
6 7k95:A 53 30 0.0698 0.2264 0.4000 1.3 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
7 2zba:D 391 49 0.0930 0.0409 0.3265 3.7
8 2zba:A 435 49 0.0930 0.0368 0.3265 3.8 2zba:B, 2zba:C
9 7vfs:A 1266 48 0.0814 0.0111 0.2917 3.9 7vfu:A, 7vfv:A, 7vfw:A
10 7mix:A 1326 48 0.0814 0.0106 0.2917 3.9 7miy:A
11 3kak:B 437 43 0.0988 0.0389 0.3953 4.8
12 3kal:A 470 43 0.0988 0.0362 0.3953 4.9 3kak:A, 3kal:B
13 8ro0:O 342 36 0.0814 0.0409 0.3889 6.8 8ro1:O
14 5gp4:A 441 33 0.0581 0.0227 0.3030 6.8 5gp4:C, 5gp4:B
15 4ii1:B 139 21 0.0523 0.0647 0.4286 8.1 4ii1:A, 4ii1:C, 4ii1:D
16 6pwy:B 513 38 0.0814 0.0273 0.3684 8.5 6pwy:A, 6pwy:D, 6pwy:C
17 2d9n:A 77 21 0.0581 0.1299 0.4762 9.4 2rhk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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