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BioLiP
>protein
LGSMKIELSGGYICYSIEEDEVTIDMVEVTTKRQGIGSQLIDMVKDVAREVGLPIGLYAYPQDDSISQEDLIEFYFSNDF
EYDPDDVDGRLMRWS

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6iuf:A 96 95 1.0000 0.9896 1.0000 1.99e-65 6iuf:B
2 8v9l:x 387 28 0.1263 0.0310 0.4286 1.2 7vok:A, 7vok:B, 7vok:C, 7vok:D
3 8hey:D 1270 30 0.0947 0.0071 0.3000 1.5
4 1zun:A 204 65 0.1579 0.0735 0.2308 1.6
5 2h5m:A 102 41 0.1474 0.1373 0.3415 1.7
6 6k7l:A 992 42 0.1368 0.0131 0.3095 1.9 6k7i:A, 6k7j:A, 6k7k:A, 6k7m:A, 6k7n:A
7 1bg0:A 356 47 0.1263 0.0337 0.2553 2.4 4gvy:A, 4gvz:A, 4gw0:A, 4gw2:A, 5j99:A, 5j9a:A, 1m15:A, 1p50:A, 1p52:A, 1rl9:A, 1sd0:A
8 7eto:a 1297 27 0.0947 0.0069 0.3333 2.5 7et3:a, 7etj:a
9 7b0h:F 762 77 0.2000 0.0249 0.2468 2.8 7b07:A, 7b08:A, 7b0f:A, 7b0g:A, 7b0h:E, 1qqc:A, 5vu8:A, 2vwj:A, 2xhb:A
10 4ail:C 750 75 0.2316 0.0293 0.2933 2.9 2jgu:A
11 5wqe:A 1011 36 0.1474 0.0138 0.3889 3.5
12 4h7u:A 577 25 0.1158 0.0191 0.4400 4.5
13 1a8t:A 230 46 0.1263 0.0522 0.2609 4.6 1a7t:A, 1a7t:B, 1a8t:B, 2bmi:A, 2bmi:B, 1hlk:A, 1hlk:B, 1kr3:A, 1kr3:B, 1znb:A, 1znb:B, 2znb:A, 2znb:B, 3znb:A, 3znb:B, 4znb:A, 4znb:B
14 4hg3:A 304 36 0.1263 0.0395 0.3333 4.7 4hg3:B, 4hg3:C, 4hg3:D, 4hg5:A, 4hg5:B, 4hg5:C, 4hg5:D, 4hgd:A, 4hgd:B, 4hgd:C, 4hgd:D
15 3msu:B 426 42 0.1684 0.0376 0.3810 5.8 3msu:A
16 4flu:A 758 90 0.2632 0.0330 0.2778 5.8 4flt:A, 4flv:A, 4flw:A, 4flx:A, 4fly:A, 4flz:A, 4fm0:A, 4fm1:A, 4fm2:A
17 2awn:C 344 44 0.1895 0.0523 0.4091 6.3
18 4v63:AX 354 49 0.1474 0.0395 0.2857 6.5 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
19 4pv6:G 154 36 0.1263 0.0779 0.3333 7.1 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
20 2awn:B 374 44 0.1895 0.0481 0.4091 7.5 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
21 4etz:B 289 64 0.1789 0.0588 0.2656 8.8 4dmz:A, 4dmz:B, 4dn0:A, 4etz:A, 4eu0:A, 4euv:A
22 2awn:A 330 44 0.1895 0.0545 0.4091 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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