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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMSD
GVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGH
TARGKPARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHD
LGFDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEHMRAS
YDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVKEYVVGCAFGPGINVEMCMLKRR

The query sequence (length=379) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3eut:A 379 379 1.0000 1.0000 1.0000 0.0 3eut:C
2 3wy0:B 377 378 0.3826 0.3846 0.3836 3.23e-91 3wxy:A, 3wxy:B, 3wy0:A
3 6gw3:A 383 369 0.2718 0.2689 0.2791 1.34e-32 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
4 2d3m:A 405 385 0.2850 0.2667 0.2805 6.05e-32 2d3m:B, 2d52:A, 2d52:B
5 5wx6:B 376 321 0.2296 0.2314 0.2710 1.14e-31 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
6 1z1f:A 388 350 0.2586 0.2526 0.2800 1.20e-31
7 7bur:B 389 322 0.2454 0.2391 0.2888 1.65e-31 7bur:A, 8jrd:A, 8jrd:B
8 3awj:A 380 296 0.2507 0.2500 0.3209 2.71e-31
9 6j1m:A 381 316 0.2427 0.2415 0.2911 5.72e-29 6j1m:B, 6j1n:A, 6j1n:B
10 5wx3:C 353 321 0.2296 0.2465 0.2710 7.48e-29
11 6op5:A 383 310 0.2269 0.2245 0.2774 1.34e-28 6op5:B
12 8v8m:A 389 367 0.2612 0.2545 0.2698 1.44e-28 8v8m:C
13 1ee0:A 376 349 0.2507 0.2527 0.2722 1.63e-28 1ee0:B
14 1xes:A 387 297 0.2454 0.2403 0.3131 7.03e-28 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
15 5w8q:A 379 296 0.2084 0.2084 0.2669 8.82e-28 5w8q:B, 5wc4:A, 5wc4:B
16 8b3c:B 383 367 0.2665 0.2637 0.2752 2.17e-27 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
17 7f08:J 379 321 0.2190 0.2190 0.2586 2.71e-27 7f08:B, 7f08:D, 7f08:L
18 3wd7:A 401 367 0.2427 0.2294 0.2507 6.94e-27 7cct:A, 6l7j:A, 3wd7:B
19 1chw:A 389 322 0.2348 0.2288 0.2764 1.50e-26 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
20 4jap:C 353 323 0.2375 0.2550 0.2786 1.30e-25 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
21 7d41:A 367 339 0.2348 0.2425 0.2625 3.68e-23 7d41:B
22 7vf0:B 396 282 0.2137 0.2045 0.2872 6.82e-23 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
23 7yj6:A 390 286 0.2032 0.1974 0.2692 1.74e-22 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
24 4b0n:A 379 307 0.2164 0.2164 0.2671 7.07e-22 4b0n:B
25 1mzj:A 334 262 0.1794 0.2036 0.2595 0.15 1mzj:B
26 6pev:A 478 72 0.0422 0.0335 0.2222 0.59 4eme:A, 4eme:B, 4eme:C, 4eme:D, 6pev:B, 6pev:C, 6pev:D, 6pev:E, 6pev:F, 6pev:G, 6pev:H, 6pev:I, 6pev:J, 6pev:K, 6pev:L
27 3om9:A 329 157 0.1187 0.1368 0.2866 0.68 3om9:B, 3om9:C, 3om9:D, 1pzf:A, 1pzf:B, 1pzf:C, 1pzf:D, 1pzg:A, 1pzg:B, 1pzg:C, 1pzg:D, 1pzh:A, 1pzh:B, 1pzh:C, 1pzh:D
28 6rxj:A 235 58 0.0501 0.0809 0.3276 1.3 6rxj:B, 6rxk:A, 6rxl:A, 6rxm:A, 6rxm:B, 6rxm:C, 6rxm:D, 6rxm:E, 6rxm:F, 6rxo:A, 6rxo:B, 6rxp:A, 6rxp:B, 6rxq:A, 6rxq:B, 6rxq:C, 6rxq:D, 6rxr:A, 6rxr:B, 6rxr:C, 6rxr:D, 1s5p:A
29 8wkq:Q 134 70 0.0449 0.1269 0.2429 1.5 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
30 8cp6:B 1084 43 0.0343 0.0120 0.3023 3.8
31 8wk3:Q 119 64 0.0396 0.1261 0.2344 6.7 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
32 2q9u:A 409 33 0.0343 0.0318 0.3939 7.8 2q9u:B
33 7d5i:A 443 33 0.0369 0.0316 0.4242 8.0
34 5b7i:A 1044 224 0.1372 0.0498 0.2321 8.2
35 3jd8:A 1133 52 0.0422 0.0141 0.3077 9.0
36 6uox:A 1161 52 0.0422 0.0138 0.3077 9.2
37 6w5r:A 1194 52 0.0422 0.0134 0.3077 10.0 3gki:A, 3gkj:A, 6w5s:A, 6w5t:A, 6w5u:A, 6w5v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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