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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LGKVKSLTISFDCLNNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNTAYTQNYTEEVEYFNHKDIL
IGHFHTIHSGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPS

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4r7x:A 150 150 1.0000 1.0000 1.0000 5.99e-111 4r7x:B
2 4gej:E 142 146 0.3933 0.4155 0.4041 6.28e-27 4gej:A, 4gej:F, 4gej:C, 4gej:J, 4gej:B, 4gej:D, 4gej:H, 4gej:I
3 4ig6:A 223 56 0.0933 0.0628 0.2500 1.6
4 8wd8:A 750 41 0.1067 0.0213 0.3902 3.8 8jsi:A, 8jsi:B, 8wd8:B
5 4u3e:A 637 38 0.1000 0.0235 0.3947 3.8 4coi:A, 4coi:B, 4coj:A, 4coj:B, 4col:A, 4col:B, 4com:A, 4com:B, 4u3e:B
6 8rta:E 169 46 0.1000 0.0888 0.3261 6.2
7 8a5a:U 690 19 0.0667 0.0145 0.5263 7.3 8a5o:U, 4am7:A, 4am7:B
8 1p1i:B 498 29 0.0867 0.0261 0.4483 8.0 1p1h:B, 1p1h:D
9 1jki:A 525 29 0.0867 0.0248 0.4483 8.0 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
10 1jkf:A 466 29 0.0867 0.0279 0.4483 8.2 1jkf:B
11 7ogp:D 510 63 0.1333 0.0392 0.3175 8.5
12 8que:D 654 63 0.1333 0.0306 0.3175 8.8 7ogr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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