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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LGIVDIGALTLESGAVIDNVQIAVERWGELSPSRDNVVVVLHALTGDSHVAGPPGWWDGVVGPGAAIDTRRWCAIATNVL
GGCRGSTGPGSLHPDGKAWGSRFPAVTVRDQVRADLAALNAMGIHQVAAVVGGSMGGARALEWVIGHPETVRAGLILAVG
ARATADQIGTQSTQVAAIKADPNWQNGDYYGTGLKPDVGLQIARRFAHLTYRGEVELDTRFGNAPQDDENPLLGGRYAVE
SYLEYQGRKLVDRFDAGTYVTLTDSLSSHDVGRGRGGVEAALRSCEVPVVVGGFTSDRLYPLRLQEELAELMPGLNVVES
IYGHDGFLIETEAVGKLIRQTLELAS

The query sequence (length=346) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5w8o:B 346 346 1.0000 1.0000 1.0000 0.0 5w8o:A
2 7ryt:B 368 355 0.7717 0.7255 0.7521 0.0 8f2l:B, 8f2l:A, 8f2l:C, 8f2l:D, 8f2l:F, 8f2l:G, 8f2l:H, 8f2l:I, 8f2l:J, 8f2l:K, 8f2l:L, 6pux:A, 6pux:B, 7ryt:A, 7ryt:C, 7ryt:D, 7ryt:E, 7ryt:F
3 6ioh:A 375 356 0.7948 0.7333 0.7725 0.0 6ioh:B, 6ioi:A, 6ioi:B
4 2vav:B 350 348 0.3815 0.3771 0.3793 2.35e-70 2vat:A, 2vat:B, 2vat:C, 2vat:D, 2vat:E, 2vat:F, 2vat:G, 2vat:H, 2vat:I, 2vat:J, 2vat:K, 2vat:L, 2vav:A, 2vav:C, 2vav:D, 2vav:E, 2vav:F, 2vav:G, 2vav:H, 2vav:I, 2vav:J, 2vav:K, 2vav:L, 2vax:A, 2vax:B, 2vax:C, 2vax:D, 2vax:E, 2vax:F, 2vax:G, 2vax:H, 2vax:I, 2vax:J, 2vax:K, 2vax:L
5 7c4d:A 261 58 0.0462 0.0613 0.2759 0.56
6 2a2z:B 221 101 0.0751 0.1176 0.2574 0.70 2a2z:D, 2a30:B, 2a30:D, 3mjr:D, 2zi5:A, 2zi5:C, 2zi5:D, 2zi6:A, 2zi6:C, 2zi6:D, 2zi7:B, 2zi7:A, 2zia:A, 2zia:B
7 8i0p:w 434 76 0.0694 0.0553 0.3158 0.71 7abh:4, 7abi:4, 7evo:C, 8hk1:C, 8i0r:w, 8i0s:w, 8i0t:w, 8i0u:w, 7onb:N, 7q3l:9, 7q4o:9, 7q4p:9, 6qx9:A3, 8r08:9, 8rm5:9, 7vpx:C, 6y50:9
8 6ff7:9 432 76 0.0694 0.0556 0.3158 0.74
9 1g8t:A 241 38 0.0462 0.0664 0.4211 1.3 1g8t:B
10 1jft:A 340 63 0.0520 0.0529 0.2857 1.5 1bdh:A, 1bdi:A, 1jfs:A, 1jh9:A, 1pnr:A, 2pua:A, 2pub:A, 2puc:A, 2pud:A, 2pue:A, 2puf:A, 2pug:A, 1qp0:A, 1qp4:A, 1qp7:A, 1qpz:A, 1qqa:A, 1qqb:A, 1vpw:A, 1wet:A, 1zay:A
11 7xrt:A 268 45 0.0549 0.0709 0.4222 2.2 7xrt:B, 7xrt:C, 7xrt:D, 7xrt:E, 7xrt:F, 7xrt:G, 7xrt:H, 7xrt:I, 7xrt:J, 7xrv:A, 7xrv:B, 7xrv:D, 7xrv:E, 7xrv:F, 7xrv:G, 7xrv:H, 7xrv:I, 7xrv:J
12 8us3:A 552 60 0.0491 0.0308 0.2833 4.0 8us1:A
13 5frd:A 256 35 0.0434 0.0586 0.4286 5.3 5frd:B
14 5h3h:B 269 30 0.0376 0.0483 0.4333 6.7 5h3h:A
15 2og1:A 285 48 0.0520 0.0632 0.3750 8.2 2puh:A, 2puj:A, 2rht:A, 2rhw:A, 3v1m:A, 3v1n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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