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BioLiP
>protein
LGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLAT
EDKEALKKQLP

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cs2:A 134 91 1.0000 0.6791 1.0000 1.73e-65
2 2n8a:A 214 91 1.0000 0.4252 1.0000 1.36e-63 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
3 2n8a:A 214 85 0.3187 0.1355 0.3412 1.02e-08 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
4 2dmj:A 106 85 0.3187 0.2736 0.3412 2.24e-09
5 8g0h:C 227 85 0.3187 0.1278 0.3412 5.66e-09 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
6 1uw0:A 117 89 0.2857 0.2222 0.2921 2.87e-07
7 1v9x:A 114 87 0.2967 0.2368 0.3103 4.03e-07
8 7kct:A 453 50 0.1978 0.0397 0.3600 0.59 7kbl:A, 7kbl:B, 7kc7:A, 7kct:B
9 7lxd:A 1190 73 0.1648 0.0126 0.2055 1.5 6v8p:A
10 7q8g:AA 222 37 0.1429 0.0586 0.3514 2.7 1fh0:A, 1fh0:B, 7q8d:AA, 7q8d:BA, 7q8f:BA, 7q8f:AA, 7q8g:BA, 7q8h:AA, 7q8h:BA, 7q8i:AA, 7q8i:BA, 7q8j:AA, 7q8j:BA, 7q8k:AA, 7q8k:BA, 7q8l:AA, 7q8l:BA, 7q8m:AA, 7q8m:BA, 7q8n:AA, 7q8n:BA, 7q8o:BA, 7q8o:AA, 7q8p:AA, 7q8p:BA, 7q8q:AA, 7q8q:BA, 7q9c:AA, 7q9c:BA, 7q9h:AA, 7q9h:BA, 7qff:AA, 7qff:BA, 7qfh:AA, 7qfh:BA, 7qgw:A, 7qgw:B, 7qhj:AA, 7qhj:BA, 7qhk:AA, 7qhk:BA, 7qns:AA, 7qns:BA, 7qo2:AA, 7qo2:BA
11 7bjq:B 445 38 0.1538 0.0315 0.3684 5.9 7bhi:A, 7bhi:B, 7bih:A, 7bih:B, 7bjq:A, 7bmf:A, 7bmf:B
12 8acr:A 486 23 0.1209 0.0226 0.4783 6.1 8ac7:B, 8ac7:A, 8ac9:A, 8ac9:B, 8acg:F, 8acg:D, 8acg:A, 8acg:E, 8acg:B, 8acg:C, 8ack:B, 8ack:A
13 2okl:A 185 36 0.1429 0.0703 0.3611 6.7 2okl:B
14 8qo9:K 212 70 0.1648 0.0708 0.2143 9.0 7aav:K, 7abf:K, 7abg:K, 7abi:K, 8h6k:4K, 8q7n:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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