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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LFQPADVILDPNTANPILLVSDDQRSLQRADERQNLPDNPERFDWHYCVLGCKSFTSGRHYWEVEVGDRKEWHIGVCQEN
VERKCWVKMTPENGFWTVGLTDGSKYRALSDPRTKLTVANPPQRVGVFLDYETGEVSFYNAMDGSHIYTFPHTFFSGPLW
PVFRILTLEPTALTICPA

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jya:B 191 178 1.0000 0.9319 1.0000 1.51e-135 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
2 6j0k:A 191 178 0.8034 0.7487 0.8034 2.90e-109 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
3 8ixv:A 187 178 0.7921 0.7540 0.7921 8.92e-108 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
4 8hjt:A 197 178 0.5562 0.5025 0.5562 9.35e-66 8hjt:B
5 8igt:A 208 181 0.5337 0.4567 0.5249 8.02e-59 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
6 4cg4:C 376 178 0.4719 0.2234 0.4719 2.21e-53 4cg4:D, 4cg4:E, 4cg4:F
7 8pd6:A 181 169 0.4719 0.4641 0.4970 2.73e-52
8 7ovx:A 174 173 0.4045 0.4138 0.4162 1.23e-37 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xyz:B 456 167 0.2978 0.1162 0.3174 5.80e-27 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
10 7xt2:B 388 167 0.2753 0.1263 0.2934 1.27e-23 7xt2:A
11 4b3n:A 557 163 0.3315 0.1059 0.3620 2.73e-22 4b3n:B
12 3muo:A 684 27 0.0730 0.0190 0.4815 4.1 3iuq:A, 3iur:A, 3ivm:A
13 8p23:B 715 17 0.0393 0.0098 0.4118 4.4 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
14 6ghr:B 342 49 0.0787 0.0409 0.2857 4.5 4boy:A, 4boy:B, 6gfo:A, 6gfo:B, 6gfo:C, 6gfo:D, 6gfp:A, 6gfp:B, 6gfq:B, 6gfq:A, 6gfr:A, 6gfr:B, 6gg7:B, 6gg7:A, 6ghl:A, 6ghl:D, 6ghl:B, 6ghl:C, 6ghr:D, 6ghr:A, 6ghr:C, 6gve:D, 6gve:A, 6gve:E, 6gve:F, 6gve:I, 6gve:K, 6gve:N, 6gve:O, 3zcx:A, 3zcx:B, 3zdf:B, 3zdf:A
15 7dd9:A 1129 91 0.1348 0.0213 0.2637 5.0 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
16 4uwq:A 548 56 0.1011 0.0328 0.3214 5.2 4uwq:D, 4uwq:G, 4uwq:J, 2wdc:A, 2wdd:A, 2wde:A, 2wdf:A
17 2hox:B 427 26 0.0618 0.0258 0.4231 5.3 2hor:A, 2hox:C, 2hox:A, 2hox:D, 1lk9:B, 1lk9:A
18 6fhj:A 979 67 0.1180 0.0215 0.3134 5.6 6fhn:A
19 3ah1:B 288 34 0.0618 0.0382 0.3235 8.6 3ah1:A, 3ah4:B
20 5hiw:A 391 39 0.0787 0.0358 0.3590 8.6
21 8eg3:A 554 48 0.0843 0.0271 0.3125 8.7 1p49:A
22 7aoe:A 1401 71 0.1011 0.0128 0.2535 8.9 7aoc:A, 7aod:A, 7aod:M
23 6eg1:A 220 56 0.0843 0.0682 0.2679 9.5 6eg1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218