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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LFKLTEISAIGYVVGLEGERIRINLHEGLQGRLASHRKGVSSVTQPGDLIGFDAGNILVVARVTDMAFVIPLRQIIAYAI
GFVKRELNGYVFISEDWRLPALGSSAVPLTSDFLNIIYSIDKEELPKAVELGVDSRTKTVKIFASVDKLLSRHLAVLGST
GYGKSNFNALLTRKVSEKYPNSRIVIFDINGEYAQAFTGIPNVKHTILGESPNVDSLEKKQQKGELYSEEYYCYKKIPYQ
ALGFAGLIKLLRPSDKTQLPALRNALSAINRTHFKSRNIYLEKDDGETFLLYDDCRDTNQSKLAEWLDLLRRRRLKRTNV
WPPFKSLATLVAEFGCVAADRSNGSKRDAFGFSNVLPLVKIIQQLAEDIRFKSIVNLNGGGELADGGTHWDKAMSDEVDY
FFGKEKGQENDWNVHIVNMKNLAQDHAPMLLSALLEMFAEILFRRGQERSYPTVLLLEEAHHYLRERLAKEGRKFKCSLI
VSTQRPSELSPTVLAMCSNWFSLRLTNERDLQALRYAMESGNEQILKQISGLPRGDAVAFGSAFNLPVRISINQARPGPK
SSDAVFSEEWANC

The query sequence (length=573) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j4u:O 585 585 0.9965 0.9761 0.9761 0.0 8j4u:M, 8j4u:N, 8su9:M, 8su9:N, 8su9:O, 8sub:M, 8sub:N, 8sub:O, 8suw:M, 8suw:N, 8suw:O, 8uae:M, 8uae:N, 8uae:O, 8uaf:M, 8uaf:N, 8uaf:O
2 8j4u:P 559 584 0.9529 0.9767 0.9349 0.0 8j4u:Q, 8su9:P, 8su9:Q, 8sub:P, 8sub:Q, 8uae:P, 8uae:Q, 8uaf:P, 8uaf:Q
3 8wiv:D 602 592 0.2531 0.2409 0.2449 8.14e-32 8wk0:D
4 8wiv:O 657 604 0.2513 0.2192 0.2384 5.89e-30 8wiv:M, 8wiv:L, 8wj3:M, 8wj3:O, 8wj3:L, 8wk0:M, 8wk0:O, 8wk0:L
5 8xaw:B 567 609 0.2478 0.2504 0.2332 1.27e-23 8xaw:C, 8xaw:D, 8xaw:E, 8xaw:A, 8xaw:F, 8xax:A, 8xax:B, 8xax:C, 8xax:D, 8xax:E, 8xax:F, 8xay:B, 8xay:C, 8xay:D, 8xay:E, 8xay:A, 8xay:F
6 8wk0:N 542 173 0.0820 0.0867 0.2717 4.89e-16
7 8wk0:N 542 97 0.0628 0.0664 0.3711 5.76e-12
8 4d2i:A 464 155 0.0698 0.0862 0.2581 5.42e-11 4d2i:B
9 4d2i:A 464 195 0.0960 0.1185 0.2821 4.78e-05 4d2i:B
10 9ev4:A 553 42 0.0349 0.0362 0.4762 0.42
11 9ev3:A 577 42 0.0349 0.0347 0.4762 0.43 9ev5:A, 9ev5:B, 9ev5:C, 9ev5:D, 9ev6:A, 9ev6:B, 9ev6:C, 9ev6:D
12 6yuf:D 1272 131 0.0576 0.0259 0.2519 1.2
13 3sur:A 504 89 0.0366 0.0417 0.2360 1.4 3sus:A, 3sut:A, 3suu:A, 3suv:A, 3suw:A
14 1n97:A 385 70 0.0279 0.0416 0.2286 2.3 1n97:B, 1wiy:A, 1wiy:B
15 3wmp:D 94 23 0.0157 0.0957 0.3913 2.8 3wmp:F, 5x4a:H, 5x4a:I, 5x4a:A, 5x4a:C
16 2iut:A 408 53 0.0314 0.0441 0.3396 3.0 2iut:B, 2iuu:A, 2iuu:B, 2iuu:C, 2iuu:D, 2iuu:E, 2iuu:F, 6t8b:A, 6t8b:B, 6t8b:C, 6t8b:F, 6t8b:D, 6t8b:E, 6t8g:A, 6t8g:B, 6t8g:C, 6t8g:D, 6t8g:E, 6t8g:F, 6t8o:A, 6t8o:B, 6t8o:C, 6t8o:D, 6t8o:E, 6t8o:F
17 7moq:C 4159 143 0.0646 0.0089 0.2587 3.1 6zyy:C
18 6zyw:C 4433 143 0.0646 0.0083 0.2587 3.2
19 4nh0:A 861 57 0.0297 0.0197 0.2982 3.4 4n1a:A, 4n1a:B, 4n1a:C, 4n1a:E, 4nh0:B
20 8bwy:C 4264 143 0.0646 0.0087 0.2587 3.5
21 5u7x:F 412 132 0.0628 0.0874 0.2727 3.5
22 8bx8:A 4453 143 0.0646 0.0083 0.2587 3.5 7k58:A, 7k5b:A, 7kek:A
23 7o0t:A 354 67 0.0314 0.0508 0.2687 3.5 7o0t:B, 7o0t:C, 7o0t:D
24 8him:B 971 75 0.0349 0.0206 0.2667 4.0
25 8ips:A 573 21 0.0227 0.0227 0.6190 5.9 8ipt:C, 8ipt:D, 7zda:C, 7zdb:C, 7zdc:C, 7zdf:C, 7zdg:C, 7zdk:C, 7zdl:C, 7zdt:C, 7zdu:C, 7zdw:C, 7ze5:C, 7zec:C
26 5c16:A 487 114 0.0541 0.0637 0.2719 8.6 5c16:B, 5c16:C, 5c16:D
27 6s47:Bi 952 41 0.0314 0.0189 0.4390 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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