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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKVKGIVEAVHERTSVLTRPVKPIAANIDQI
VIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALT
GRISIFAGQSGVGKSSLLNALLGLQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKY
RDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5uz4:Z 323 292 0.9532 0.8204 0.9075 0.0 4a2i:V, 7boi:W, 7nar:W, 5no2:Z, 5no3:Z, 5no4:Z, 2rcn:A, 2ykr:W
2 6h4d:A 274 281 0.4892 0.4964 0.4840 2.09e-91
3 1u0l:A 278 275 0.3993 0.3993 0.4036 2.04e-56 1u0l:B, 1u0l:C
4 2yv5:A 293 224 0.3345 0.3174 0.4152 7.19e-46
5 1t9h:A 287 242 0.3165 0.3066 0.3636 4.67e-44
6 6zhm:A 269 249 0.2842 0.2937 0.3173 5.46e-33 6zhl:A, 6zjo:A, 6zjo:B
7 3cnl:A 233 115 0.1007 0.1202 0.2435 0.002 3cnn:A, 3cno:A
8 8ipr:C 515 27 0.0540 0.0291 0.5556 0.012 8ipr:E
9 7szs:A 204 54 0.0791 0.1078 0.4074 0.036 7szs:B
10 5m7h:A 420 179 0.1619 0.1071 0.2514 0.11 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
11 2gj8:D 172 57 0.0791 0.1279 0.3860 0.20 2gj8:A, 2gj8:B, 2gj8:C, 2gj9:A, 2gj9:B, 2gj9:C, 2gj9:D, 2gja:A, 2gja:B
12 3iev:A 302 57 0.0683 0.0629 0.3333 0.29 7c1o:A, 3r9w:A, 3r9x:A
13 3pqc:B 194 37 0.0576 0.0825 0.4324 0.32 3pqc:A
14 2j3e:A 249 70 0.0791 0.0884 0.3143 0.36 3bb3:A, 3bb4:A, 3def:A
15 7wix:B 576 93 0.1043 0.0503 0.3118 0.37 7wiw:B
16 7y1j:A 1204 24 0.0504 0.0116 0.5833 0.55
17 7mit:E 1438 24 0.0504 0.0097 0.5833 0.55 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
18 7y1n:A 1171 24 0.0504 0.0120 0.5833 0.56 7vlr:A, 7vls:A, 7vlt:A, 7vlu:A, 7y1k:A, 7y1m:A
19 7c3k:B 389 114 0.1043 0.0746 0.2544 0.59 7c3k:A, 8jqz:A, 8jqz:B
20 9bht:A 220 46 0.0647 0.0818 0.3913 0.89 9bht:F
21 9iuk:A 1335 119 0.1115 0.0232 0.2605 0.91 9iul:A, 9ium:A
22 8ips:B 588 25 0.0504 0.0238 0.5600 1.1 8ipt:A, 8ipt:E, 7zda:D, 7zdb:D, 7zdc:D, 7zde:D, 7zdf:D, 7zdg:D, 7zdk:D, 7zdl:D, 7zdr:D, 7zdt:D, 7zdu:D, 7zdv:D, 7zdw:D, 7ze5:D, 7zec:D
23 1n7d:A 639 152 0.1151 0.0501 0.2105 1.3 1ajj:A, 3bps:E, 1d2j:A, 1f8z:A, 2fcw:B, 3gcw:E, 3gcx:E, 1hj7:A, 1hz8:A, 1i0u:A, 2kri:B, 2lgp:A, 3m0c:C, 3p5b:L, 3p5c:L, 1xfe:A
24 5j5l:A 152 54 0.0683 0.1250 0.3519 1.4 5j5k:A
25 7am2:BV 199 58 0.0791 0.1106 0.3793 1.5
26 6qtz:o 325 122 0.1151 0.0985 0.2623 1.5 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
27 5cyp:A 248 70 0.0863 0.0968 0.3429 1.5 5cyp:B, 5cyp:C
28 7pd3:z 311 99 0.1079 0.0965 0.3030 2.7 8pk0:z, 8qsj:z
29 7o9k:C 255 99 0.1079 0.1176 0.3030 2.7 7o9m:C
30 2hf8:A 211 54 0.0683 0.0900 0.3519 3.0 2hf8:B, 2hf9:A, 2hf9:B
31 3nh5:A 306 27 0.0468 0.0425 0.4815 3.0 3nfz:A, 3nh4:A, 3nh8:A
32 1g6h:A 254 50 0.0576 0.0630 0.3200 3.1 1g9x:A, 1g9x:B, 1g9x:C
33 6mfu:A 216 91 0.0791 0.1019 0.2418 3.2 6mfu:B, 6mfu:C, 6mfu:D
34 5ykf:B 1309 42 0.0612 0.0130 0.4048 3.4 5ykf:D, 5ykf:F, 5ykf:H, 5ykg:B, 5ykg:D, 5ykg:F, 5ykg:H, 5yw8:B, 5yw8:D, 5yw8:F, 5yw8:H, 5yw9:B, 5yw9:D, 5yw9:F, 5yw9:H, 5ywa:B, 5ywa:D, 5ywa:F, 5ywa:H
35 6baa:E 1317 42 0.0612 0.0129 0.4048 3.4 6baa:F, 6baa:G, 6baa:H
36 7u1s:E 1439 42 0.0612 0.0118 0.4048 3.5 6pza:C, 6pzi:G, 7tys:E, 7tyt:E, 7u1e:E, 7u1q:E, 7u24:E, 7u2x:E, 7u6y:E, 7u7m:E, 7uaa:E
37 2awn:D 301 26 0.0432 0.0399 0.4615 3.6 2awo:D
38 6jb1:B 1366 42 0.0612 0.0124 0.4048 3.7 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
39 1svw:A 190 30 0.0468 0.0684 0.4333 3.7 1svi:A, 1svw:B
40 5cyp:D 227 66 0.0791 0.0969 0.3333 3.7
41 7am2:BT 300 84 0.0755 0.0700 0.2500 3.9
42 2awn:A 330 26 0.0432 0.0364 0.4615 4.0
43 6c3p:E 1359 42 0.0612 0.0125 0.4048 4.0 6c3p:H, 6c3p:G, 6c3p:F, 5ywb:B, 5ywb:D, 5ywb:F, 5ywb:H, 5ywc:B, 5ywc:D, 5ywc:F, 5ywc:H
44 3ieu:A 293 43 0.0612 0.0580 0.3953 4.0 3ieu:B
45 6c3o:E 1290 42 0.0612 0.0132 0.4048 4.0 6c3o:H, 6c3o:G, 6c3o:F
46 5t62:W 306 34 0.0432 0.0392 0.3529 4.1
47 7s5x:E 1412 42 0.0612 0.0120 0.4048 4.2 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
48 1wf3:A 296 30 0.0504 0.0473 0.4667 4.2
49 4hlu:C 249 25 0.0432 0.0482 0.4800 4.6 4hlu:D, 4zir:B
50 6uqq:C 280 54 0.0647 0.0643 0.3333 4.7 3sop:A, 3sop:B, 6uqq:D, 4z51:A, 4z54:A, 4z54:B
51 2awn:B 374 26 0.0432 0.0321 0.4615 5.1 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
52 6jbj:A 565 110 0.0971 0.0478 0.2455 5.2 6jbj:B
53 8dg5:A 1635 166 0.1619 0.0275 0.2711 5.3 8dg7:A
54 6n8n:W 377 34 0.0432 0.0318 0.3529 5.7 6n8o:W
55 2yf3:C 153 57 0.0647 0.1176 0.3158 5.8 5hva:A, 5hva:B, 5hva:C, 5hva:D, 5hwu:A, 5hwu:B, 5hx1:A, 5hx1:C, 5hx1:B, 5hx1:D, 5hyl:A, 5hyl:C, 5hyl:B, 5hyl:D, 5hzz:A, 5hzz:B, 5hzz:C, 5hzz:D, 5i0j:A, 5i0j:D, 5i0j:B, 5i0j:C, 5i0m:A, 5i0m:D, 5i0m:B, 5i0m:C, 2yf3:A, 2yf3:B, 2yf3:D, 2yf3:E, 2yf3:F, 2yfc:A, 2yfc:B, 2yfc:C, 2yfc:D, 2yfd:A, 2yfd:B, 2yfd:C, 2yfd:D
56 5ucv:A 187 75 0.0827 0.1230 0.3067 6.0
57 2cxx:A 184 19 0.0432 0.0652 0.6316 6.2 2cxx:B, 2cxx:C
58 2anb:A 206 25 0.0468 0.0631 0.5200 6.4 2an9:A, 2an9:B, 2f3r:A, 2f3r:B, 2f3t:A, 2f3t:B, 2f3t:E, 2f3t:F
59 8xoo:O 572 97 0.0935 0.0455 0.2680 6.7
60 8xon:O 593 97 0.0935 0.0438 0.2680 7.4 8xon:S, 8xon:R, 8xon:Q, 8xon:P, 8xon:T, 8xoo:R, 8xoo:Q, 8xoo:P, 8xoo:T, 8xoo:S
61 3qkt:B 319 20 0.0432 0.0376 0.6000 8.0 4ncj:A, 4ncj:B, 3qkt:D, 3qku:B
62 3qku:A 359 20 0.0432 0.0334 0.6000 8.2 1f2u:A, 1f2u:D, 1f2u:C, 1f2u:B, 3qks:A, 3qks:B
63 2awn:C 344 24 0.0432 0.0349 0.5000 8.4
64 3qkt:A 339 20 0.0432 0.0354 0.6000 8.6 4ncj:C, 4ncj:D, 3qkt:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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