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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LEYPIGTPQNLAGMEIAAVYLQPIDMEPEGHMRKASESDIHIEADIHALSNNPNGYPEGFWVPFLFIKYEITKVGGSGAP
ITGDMMAMVASDGPHYGDNVKLQGPGKYKVKYTIYPPNAKENPMSPYYGRHTDRETGVRPWFKTFSVEWDFTYAGI

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r5e:B 157 156 1.0000 0.9936 1.0000 9.66e-116 7r4v:B, 7r4v:A, 7r4z:A, 7r4z:B, 7r5e:A, 7r5g:A, 7r5g:B, 7r5p:A, 7r5p:B, 7r5p:C, 7r5p:D, 7r5p:E, 7r5p:F
2 5i0v:A 159 161 0.5449 0.5346 0.5280 4.47e-51 5i0v:B, 5i0w:A, 5i0w:B, 3lzl:A, 3lzl:B, 3lzn:A, 3lzn:B, 3lzo:A, 3lzo:B, 3lzp:A, 3lzp:B, 3lzq:A, 3lzq:B, 3lzr:A, 3lzr:B, 6wed:A, 6wed:B, 6wee:A, 6wee:B, 6wee:C, 6wee:D, 6wee:E, 6wee:F, 6wef:C, 6wef:D, 6wef:A, 6wef:B, 6wef:E, 6wef:F, 6wef:G, 6wef:H, 6wef:I, 6wef:J, 6wef:K, 6wef:L
3 5i0x:B 158 155 0.4872 0.4810 0.4903 7.51e-46 5i0x:A, 5i0y:A, 5i0y:B, 3nrq:A, 3nrq:B
4 8t7m:B 160 159 0.4487 0.4375 0.4403 1.39e-31 8t7l:A, 8t7l:B, 8t7m:A
5 2o6d:A 158 161 0.4038 0.3987 0.3913 2.32e-23 2o6d:B, 2o6e:A, 2o6e:B, 3pjl:A, 3pjl:B, 3pjn:A, 3pjn:B
6 4a69:A 369 64 0.1282 0.0542 0.3125 0.64 4a69:B
7 6j38:A 368 37 0.0897 0.0380 0.3784 4.5 6j38:B, 6j39:A, 6j39:B
8 7fgx:D 563 34 0.1026 0.0284 0.4706 5.7 7fgw:A, 7fgw:B, 7fgw:C, 7fgw:D, 7fgx:A, 7fgx:B, 7fgx:C, 7fgy:A, 7fgy:B, 7fgy:C, 7fgy:D
9 3dwb:A 660 20 0.0641 0.0152 0.5000 7.8
10 6mea:A 162 56 0.0962 0.0926 0.2679 8.0 6mea:B, 6meb:A, 6meb:B, 6men:A, 6men:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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