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BioLiP
>protein
LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKI
DYGEYMDKNNVRRQATTIIADNIIFLS

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rup:A 111 110 1.0000 0.9640 0.9727 6.88e-75 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
2 8uzt:B 100 107 0.9252 0.9900 0.9252 7.29e-66
3 3ulp:C 116 113 0.4019 0.3707 0.3805 3.58e-22 3ulp:A, 3ulp:B, 3ulp:D
4 1eqq:B 120 103 0.3271 0.2917 0.3398 1.64e-17 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
5 5odn:D 106 106 0.3458 0.3491 0.3491 1.33e-16 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
6 6irq:C 104 99 0.3458 0.3558 0.3737 3.86e-15 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
7 5odp:G 100 107 0.3364 0.3600 0.3364 1.34e-11 5odp:A
8 6bhx:C 102 103 0.3178 0.3333 0.3301 4.80e-09 6bhx:A, 6bhx:B
9 8gw5:A 99 102 0.2710 0.2929 0.2843 3.96e-08 7ym1:A
10 2vw9:A 108 105 0.2336 0.2315 0.2381 1.01e-06 2vw9:B
11 7dep:B 102 103 0.2897 0.3039 0.3010 1.15e-06
12 3vdy:A 101 103 0.2523 0.2673 0.2621 9.88e-05 3vdy:B
13 3udg:C 214 99 0.2336 0.1168 0.2525 0.001 3udg:B, 3udg:A
14 3udg:C 214 79 0.1869 0.0935 0.2532 0.36 3udg:B, 3udg:A
15 4oau:C 692 28 0.1215 0.0188 0.4643 1.4 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
16 4jqp:A 330 20 0.0935 0.0303 0.5000 2.9 4jqp:B
17 1uhl:B 219 44 0.1589 0.0776 0.3864 3.3
18 4b3n:A 557 36 0.1121 0.0215 0.3333 4.0 4b3n:B
19 4gfh:A 1102 27 0.0841 0.0082 0.3333 4.9 4gfh:F, 3l4j:A, 3l4k:A, 1pvg:A, 1pvg:B, 1qzr:A, 1qzr:B, 2rgr:A
20 2acl:H 244 44 0.1589 0.0697 0.3864 5.7 2acl:B, 2acl:D, 2acl:F, 5avi:A, 5avi:C, 5avl:A, 3fal:B, 3fal:D, 3fc6:B, 3fc6:D, 5hjs:A, 5hjs:B, 3ipq:A, 3ips:A, 3ips:B, 3ipu:A, 3ipu:B
21 7pik:C 557 39 0.1121 0.0215 0.3077 6.2 7pik:A, 7pik:B
22 3mu3:A 140 26 0.1028 0.0786 0.4231 9.2 3mu3:B
23 2d09:A 404 24 0.1028 0.0272 0.4583 9.6 2d0e:A, 5de9:A, 5de9:B, 1s1f:A, 1se6:A, 1se6:B, 1t93:A, 3tzo:A, 3tzo:B
24 4hh6:A 157 32 0.1028 0.0701 0.3438 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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