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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDS
IHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGS
GVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA
FGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILEN
YFSSLKNP

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3uwp:A 341 328 1.0000 0.9619 1.0000 0.0 7bwd:K, 5drt:A, 5drt:B, 5dry:A, 5dry:B, 5dsx:A, 5dsx:B, 5dt2:A, 5dt2:B, 5dtm:A, 5dtm:B, 5dtq:A, 5dtq:B, 5dtr:A, 5dtr:B, 4ek9:A, 4ekg:A, 4eki:A, 4eqz:A, 4er3:A, 4er5:A, 4er6:A, 4er7:A, 4hra:A, 6in3:A, 6j99:K, 6jm9:X, 6jma:X, 5juw:A, 5mvs:A, 5mvs:B, 5mw3:A, 5mw3:B, 5mw4:A, 5mw4:B, 6nj9:K, 6nj9:M, 6nqa:K, 1nw3:A, 6o96:K, 3qow:A, 3qox:A, 3sr4:A, 3sx0:A, 6te6:A, 6te6:B, 6tel:A, 6tel:B, 6ten:A, 6ten:B, 4wvl:A, 7xcr:K, 7xct:K, 7xct:M
2 4er0:A 315 328 0.9360 0.9746 0.9360 0.0
3 1u2z:C 385 297 0.2561 0.2182 0.2828 2.80e-28 7k6p:K, 7k6q:K, 1u2z:A, 1u2z:B
4 8fjm:A 251 178 0.1280 0.1673 0.2360 1.85e-08 8fjm:B, 8fjn:A
5 5fad:A 160 145 0.1128 0.2313 0.2552 5.70e-04 5fa8:A
6 5xj2:A 454 71 0.0701 0.0507 0.3239 0.28 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
7 1l3i:A 186 170 0.1220 0.2151 0.2353 0.43 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
8 4yzt:A 512 77 0.0610 0.0391 0.2597 1.0
9 4uzs:A 687 78 0.0549 0.0262 0.2308 2.2 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
10 8pjd:A 347 75 0.0610 0.0576 0.2667 5.5 8bva:A, 8c1j:A, 5ful:A, 5fwa:A, 5fwd:A, 5jmq:A
11 3al0:C 564 130 0.1098 0.0638 0.2769 6.4 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
12 7ef9:A 414 95 0.0640 0.0507 0.2211 6.9 7ef8:A
13 6ru4:A 276 45 0.0457 0.0543 0.3333 7.7 6r5s:A, 6r5s:B, 6ru4:B, 6ru4:C, 6ru4:D
14 3na1:A 472 78 0.0640 0.0445 0.2692 7.8 3n9y:A, 3n9y:B, 3n9z:A, 3n9z:B, 3na0:A, 3na0:B, 3na1:B
15 8ibt:A 694 176 0.1220 0.0576 0.2273 9.1 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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