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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LEKLEERRAQARLGGGEKRLEAQHKRGKLTARERIELLLDHGSFEEFDMFVQHRSTDFGMEKQKIPGDGVVTGWGTVNGR
TVFLFSKDFTVFGGSSSEAHAAKIVKVQDMALKMRAPIIGIFDAGGARIQEGVAALGGHGEVFRRNVAASGVIPQISVIM
GPCAGGDVYSPAMTDFIFMVRDTSYMFVTGPDVVKTVTNEVVTAEELGGAKVHTSKSSIADGSFENDVEAILQIRRLLDF
LPANNIEGVPEIESFDDVNRLDKSLDTLIPDNPNKPYDMGELIRRVVDEGDFFEIQAAYARNIITGFGRVEGRTVGFVAN
QPLVLAGVLDSDASRKAARFVRFCNAFSIPIVTFVDVPGFLPGTAQEYGGLIKHGAKLLFAYSQATVPLVTIITRKAFGG
AYIVMASKHVGADLNYAWPTAQIAVMGAKGAVEIIFRAEIGDADKVAERTKEYEDRFLSPFVAAERGYIDEVIMPHSTRK
RIARALGMLRTKEMEQPRKKHDNIPL

The query sequence (length=506) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pn7:A 506 506 0.9980 0.9980 0.9980 0.0 8pn7:B, 8pn7:C, 8pn7:D, 8pn7:E, 8pn7:F, 8pn8:A, 8pn8:B, 8pn8:C, 8pn8:D, 8pn8:E, 8pn8:F, 6ybp:A, 6ybp:F, 6ybq:A, 6ybq:C, 6ybq:D, 6ybq:E, 6ybq:F
2 3n6r:B 506 506 0.7154 0.7154 0.7154 0.0 3n6r:D, 3n6r:F, 3n6r:H, 3n6r:J, 3n6r:L
3 7ybu:P 507 507 0.6146 0.6134 0.6134 0.0 7ybu:G, 7ybu:C, 7ybu:K, 7ybu:E, 7ybu:I
4 3ib9:A 521 513 0.6047 0.5873 0.5965 0.0 3ib9:B, 1xny:A, 1xny:B
5 1vrg:A 515 511 0.5850 0.5748 0.5793 0.0 1vrg:B, 1vrg:C, 1vrg:D, 1vrg:E, 1vrg:F
6 8sgx:E 489 486 0.5395 0.5583 0.5617 0.0 8sgx:F, 8sgx:G, 8sgx:H, 8sgx:C, 8sgy:C, 8sgy:E, 8sgy:G, 8sgy:D, 8sgz:C, 8sgz:D, 8sgz:E, 8sgz:F, 8sgz:G, 8sgz:H
7 1on3:E 520 510 0.5198 0.5058 0.5157 0.0 1on3:A, 1on3:D, 1on3:B, 1on3:C, 1on3:F, 1on9:A, 1on9:B, 1on9:C, 1on9:D, 1on9:E, 1on9:F
8 5ini:F 511 515 0.5277 0.5225 0.5184 0.0 5inf:B, 5inf:F, 5ini:A, 5ini:D, 5ini:B, 5ini:C, 5ini:E
9 4g2r:B 441 432 0.3399 0.3900 0.3981 2.34e-89 4g2r:A, 6p7u:A, 6p7u:B, 6p7u:D, 6pk2:A, 6pk2:B, 6pk2:D, 6pk2:E, 6pk2:F, 6pk2:H, 6prw:A, 6prw:B, 6prw:D, 6prw:E, 6prw:F, 6prw:H, 6tzv:A, 6tzv:B, 6tzv:D, 6tzv:E, 6tzv:F, 6tzv:H
10 6p7u:C 410 419 0.3202 0.3951 0.3866 3.32e-81 6pk2:C, 6pk2:G, 6prw:C, 6prw:G, 6tzv:C, 6tzv:G
11 3u9s:F 537 486 0.3182 0.2998 0.3313 1.20e-71 3u9s:B, 3u9s:L, 3u9s:D, 3u9s:H, 3u9s:J
12 8j4z:J 541 520 0.3379 0.3161 0.3288 9.10e-68 8j4z:H, 8j4z:A, 8j4z:K, 8j4z:C, 8j4z:F, 8j78:J, 8j78:F, 8j78:D, 8j7d:C, 8j7d:G, 8j7d:J, 8j7d:E, 8jaw:B, 8jaw:D, 8jaw:I, 8jaw:G, 8jaw:J, 8jaw:L, 8jxl:B, 8jxl:A, 8jxl:D, 8jxl:K, 8jxl:G, 8jxl:I, 8jxm:K, 8jxm:A, 8jxm:E, 8jxm:J, 8jxn:K, 8jxn:G, 8jxn:I, 8jxn:A, 8k2v:H, 8k2v:I, 8k2v:J, 8k2v:G, 8k2v:K, 8k2v:L
13 8rth:F 542 511 0.3281 0.3063 0.3249 1.23e-65 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
14 8f3d:A 566 504 0.3162 0.2827 0.3175 2.82e-63 8f3d:B, 8f3d:C, 8f3d:D, 8f3d:E, 8f3d:F, 8f41:B, 8f41:D, 8f41:F, 8f41:A, 8f41:C, 8f41:E
15 8jxm:C 520 520 0.3162 0.3077 0.3077 1.96e-55 8j99:B, 8j99:D, 8j99:J, 8j99:G, 8j99:H, 8j99:L, 8jxm:H, 8jxn:D, 8jxn:B
16 3gma:B 566 500 0.2372 0.2120 0.2400 1.52e-33 3gf3:A, 3glm:A, 3glm:C, 3glm:B, 3glm:D, 3gma:A
17 3ff6:A 750 344 0.1700 0.1147 0.2500 1.55e-14 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A
18 2x24:B 667 367 0.1601 0.1214 0.2207 6.81e-12 2x24:A
19 2f9y:B 257 183 0.1047 0.2062 0.2896 1.94e-11
20 5vj1:D 276 190 0.1126 0.2065 0.3000 1.21e-09 5vj1:L
21 2f9i:B 260 183 0.1087 0.2115 0.3005 1.36e-08 2f9i:D, 5kdr:B
22 5csl:A 2050 374 0.1601 0.0395 0.2166 2.76e-08
23 5csl:B 2072 345 0.1462 0.0357 0.2145 3.70e-08 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
24 1uyr:A 698 345 0.1502 0.1089 0.2203 3.90e-07 5ctb:B, 3h0j:A, 3h0j:B, 3h0j:C, 3h0q:A, 3h0q:B, 3h0q:C, 3h0s:B, 3h0s:C, 1od4:C, 3pgq:B, 1uyr:B, 1uys:A, 1uys:B, 1uys:C, 1w2x:A, 1w2x:C, 1w2x:B
25 5kdr:A 301 99 0.0573 0.0963 0.2929 3.11e-04
26 7nry:X 283 104 0.0415 0.0742 0.2019 0.34 3fyj:X, 3fyk:X, 2jbp:K, 2jbp:L, 3ka0:A, 2p3g:X, 3r2y:A, 3r30:A
27 2qdg:A 366 104 0.0553 0.0765 0.2692 1.4 2qap:A, 2qap:B, 2qap:C, 2qap:D, 2qdg:B, 2qdg:C, 2qdg:D, 2qdh:A, 2qdh:B, 2qdh:C, 2qdh:D
28 6rm3:LHH 120 30 0.0257 0.1083 0.4333 1.7
29 8svz:A 120 35 0.0277 0.1167 0.4000 4.6 8svz:B
30 3tm5:A 368 90 0.0474 0.0652 0.2667 7.9 3tlj:A, 3tlj:B, 3tm4:A, 3tm4:B, 3tm5:B
31 3nqb:A 587 33 0.0296 0.0256 0.4545 8.2 3nqb:B, 3t81:A, 3t81:B
32 7sut:C 63 15 0.0198 0.1587 0.6667 9.3 7sut:G
33 3lot:D 313 80 0.0494 0.0799 0.3125 9.7 3lot:A, 3lot:B, 3lot:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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