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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKLAHNIENAIRFIKPCEQCGALSENELCEICSDKERNKNILC
IVESPKDILTLEESQSYNGLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFSKIAQ
GIPSGVNLENVDLISLNKAMNFRTK

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8k3f:A 190 185 1.0000 0.9737 1.0000 1.50e-132 8k3f:B, 8k3f:C, 8k3f:D
2 5z2v:B 197 189 0.3730 0.3503 0.3651 1.82e-36 5z2v:A
3 1vdd:A 199 184 0.3297 0.3065 0.3315 7.71e-32 4jcv:A, 4jcv:B, 2v1c:A, 2v1c:B, 1vdd:B, 1vdd:C, 1vdd:D
4 5zvq:A 194 194 0.3243 0.3093 0.3093 7.62e-31 8ab0:F, 8ab0:E, 8bpr:E, 8bpr:F
5 4o6o:D 199 188 0.3135 0.2915 0.3085 1.40e-28 4o6o:A, 4o6o:B, 4o6o:C, 4o6p:B, 4o6p:C, 3vdp:A, 3vdp:B, 3vdp:C, 3vdp:D, 3vdu:A, 3ve5:D, 3ve5:A
6 8ab0:D 157 182 0.2865 0.3376 0.2912 8.61e-22 8bpr:D
7 4pde:A 244 80 0.1243 0.0943 0.2875 0.30
8 7uio:Bc 107 33 0.0703 0.1215 0.3939 0.65
9 5g0f:A 110 24 0.0541 0.0909 0.4167 1.2
10 2aus:D 53 24 0.0432 0.1509 0.3333 1.6 2aus:B, 2ey4:E, 2ey4:F, 3hax:C, 3hay:C, 3hjw:B, 2hvy:C, 3lwo:B, 3lwp:B, 3lwq:B, 3lwr:B, 3lwv:B, 2rfk:B
11 3csk:A 710 70 0.1297 0.0338 0.3429 1.8
12 6sdk:A 199 76 0.1297 0.1206 0.3158 2.3 6sdk:B, 6sdk:C, 6sdk:D
13 6scy:B 298 17 0.0486 0.0302 0.5294 5.4 6scy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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