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BioLiP
>protein
LEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQER

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yrx:A 71 71 1.0000 1.0000 1.0000 4.34e-45
2 2gyq:A 162 25 0.1690 0.0741 0.4800 0.95 2gyq:B
3 6x1u:L 213 42 0.1972 0.0657 0.3333 2.1 6x1u:B
4 1vh2:A 152 19 0.1408 0.0658 0.5263 2.2 1inn:A, 1inn:B, 1j6v:A, 1vgx:A, 1vgx:B, 1vje:A, 1vje:B
5 6ytt:C 630 35 0.2254 0.0254 0.4571 5.1 6ytt:B, 6yu9:A, 6yu9:B, 6yu9:C, 6yu9:D, 6yua:B, 6yua:C
6 7c9m:C 260 50 0.2113 0.0577 0.3000 5.2 7c7m:A, 7c9m:A, 7c9m:B, 7c9m:D
7 1j6w:A 161 21 0.1268 0.0559 0.4286 7.1 1j6w:B, 1joe:A, 1joe:B, 1joe:C, 1joe:D
8 2j51:A 288 44 0.1972 0.0486 0.3182 8.7 8bem:A, 8bem:B, 8bem:D, 8bem:G, 6hvd:A, 2jfl:A, 4usf:A, 4usf:B, 2uv2:A
9 6c95:B 160 46 0.1549 0.0688 0.2391 9.0 6ppl:C, 6pw9:C
10 8iof:C 792 52 0.2113 0.0189 0.2885 9.2 8iof:A, 8iof:B, 8iof:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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